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G5ECF1 (G5ECF1_CAEEL) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 21. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

Protein SMG-5 EMBL CCD68991.1
Gene names
Name:smg-5 WormBase W02D3.8 EMBL CCD68991.1
ORF Names:CELE_W02D3.8 EMBL CCD68991.1, W02D3.8 WormBase W02D3.8
OrganismCaenorhabditis elegans [Reference proteome] EMBL CCD68991.1
Taxonomic identifier6239 [NCBI]
Taxonomic lineageEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis

Protein attributes

Sequence length549 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Sequences

Sequence LengthMass (Da)Tools
G5ECF1 [UniParc].

Last modified December 14, 2011. Version 1.
Checksum: 304B9C6C05A3EC08

FASTA54964,173
        10         20         30         40         50         60 
MQKSDEVTEK FKRYCNQLEK YGQTENVHSP VMAMLRRKGR KQLIEIMKRD GDCTSSINKL 

        70         80         90        100        110        120 
WIVGYYHPFQ FFIRDKEKNM AIAVLLTMFC GELQEMLSLP DDKYPALWNM YIGDFHRYMP 

       130        140        150        160        170        180 
DEEIQKCLAV GYYSRAIDLD PNQGRAFHVL AGLRADLNVA QKLRLMILGQ LADAPYKKGT 

       190        200        210        220        230        240 
ELLEYLKFPQ KESTDKLMVD FVIWALNEKS KRMDYQMTGI KIVNEFKAEI EQKLEFDWSL 

       250        260        270        280        290        300 
IMSTCRLASK LAMKKFGFQQ FYNCFDTIST LYITIYSRTI SSKCLLAEAI SWISDSAEIL 

       310        320        330        340        350        360 
GHLDEQKNEP HFQKLSVFAK TKWNELNDLV MNHINSVFTS MSLTINPSIS MTSFLLNGPI 

       370        380        390        400        410        420 
SEPNVEFLSQ LINYLVSVEF PPMEIIHDRE ESGPLLRRIN QSEQKRLDIQ IKTQNDEVNR 

       430        440        450        460        470        480 
EDWRPVYVLM DYDVIVDKIR IALKIWDIDD FICILPSTVL DELDYQKTKN RAVRPVIRAL 

       490        500        510        520        530        540 
MELQAEGKIV LKKCDNERSC AEQLVQSARR SAEDHKHIVA FLCKNPSEQK EMEGVTFYDI 


DQFYMKYLE 

« Hide

References

« Hide 'large scale' references
[1]"smg-5: A gene required for nonsense-mediated mRNA decay in Caenorhabditis elegans."
Anders K.R., Anderson P.
Submitted (JUL-1996) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[2]WormBase Consortium
Le T., Weinstock L., Rifkin L.
Submitted (JAN-1997) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Bristol N2 EMBL CCD68991.1.
[3]"Genome sequence of the nematode C. elegans: a platform for investigating biology."
Caenorhabditis elegans Sequencing Consortium
Science 282:2012-2018(1998)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Bristol N2 EMBL CCD68991.1.
[4]"Genome sequence of the nematode C. elegans: a platform for investigating biology."
The C. elegans sequencing consortium
Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Bristol N2.
[5]"An unusual arrangement of two 14-3-3-like domains in the SMG5-SMG7 heterodimer is required for efficient nonsense-mediated mRNA decay."
Jonas S., Weichenrieder O., Izaurralde E.
Genes Dev. 27:211-225(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (3.00 ANGSTROMS) OF 1-420.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
U64440 Genomic DNA. Translation: AAB06456.1.
U64441 mRNA. Translation: AAB06457.1.
FO081084 Genomic DNA. Translation: CCD68991.1.
RefSeqNP_491929.1. NM_059528.6.
UniGeneCel.19712.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
3ZHEX-ray3.00A/C1-420[»]
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaW02D3.8; W02D3.8; W02D3.8.
GeneID172391.
KEGGcel:CELE_W02D3.8.

Organism-specific databases

CTD172391.
WormBaseW02D3.8; CE25134; WBGene00004883; smg-5.

Phylogenomic databases

OMAINKLWIV.
OrthoDBEOG73FQRH.

Family and domain databases

InterProIPR002716. PIN_dom.
[Graphical view]
SMARTSM00670. PINc. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio875313.

Entry information

Entry nameG5ECF1_CAEEL
AccessionPrimary (citable) accession number: G5ECF1
Entry history
Integrated into UniProtKB/TrEMBL: December 14, 2011
Last sequence update: December 14, 2011
Last modified: April 16, 2014
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)