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G5EC23 (G5EC23_CAEEL) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 24. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

Protein HCF-1 EMBL CCD66593.1
Gene names
Name:hcf-1 EMBL CCD66593.1 WormBase C46A5.9
ORF Names:C46A5.9 WormBase C46A5.9, CELE_C46A5.9 EMBL CCD66593.1
OrganismCaenorhabditis elegans [Reference proteome] EMBL CCD66593.1
Taxonomic identifier6239 [NCBI]
Taxonomic lineageEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis

Protein attributes

Sequence length782 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Binary interactions

Sequences

Sequence LengthMass (Da)Tools
G5EC23 [UniParc].

Last modified December 14, 2011. Version 1.
Checksum: 1DF7775CA82B8309

FASTA78287,359
        10         20         30         40         50         60 
MDEDVGLEAT NYSRGDESRS EEQEKNVVRW RIVQQSTGPN PKPRHGHRAV VLKELIVIFG 

        70         80         90        100        110        120 
GGNEGMIDEL HAYNTQKREW TAPQCCGDVP TPAAAFGAIS LGNKIYRFGG MTEYGKYTND 

       130        140        150        160        170        180 
LYELQSTRWE WRRLNPRVHS NGHLPCPRIG HSFVVSQKSQ KAYVFGGLSN DLNDPKRNVP 

       190        200        210        220        230        240 
HYLDDLYVIN LSGPQHLIWE KLNATGPGPI SRESHTAVIY EKDSISRMVV YGGMNGVRLG 

       250        260        270        280        290        300 
DLWYLNLNTL HWTEIKFDDP RTGIPPMPRS LHSSVLIGDK MFVYGGWVPL LEHASTEQQT 

       310        320        330        340        350        360 
EKEWKCTSSL GCWNITEDRW VPLHLYCSDE DTIPRGRAGH CAAAVGDRMY IWSGRDGYRK 

       370        380        390        400        410        420 
AWSNQVCCRD MWLLDTILPE QPGKVQLGRA GFNSLEISWP IVQGASGYFL QIGFGDAKEQ 

       430        440        450        460        470        480 
SVSPIKRATT SPRKQPSIVP PSQKETEQSP KKPQGTAPSI ISTQGTTYTA PADPKPATDE 

       490        500        510        520        530        540 
GGLPQDLFED TEKNETASPK RSNDAQSADS STCEQKKTDE SGLEEDSEKD QKPSDAGETD 

       550        560        570        580        590        600 
EMKEENGDDD LPWFDVGIID KATINVTHYF NDRQQSLEKQ LNDLIDHNAF KCVNDSVFTT 

       610        620        630        640        650        660 
EDKIPLINGQ SYRFRVSAIN GLGKGAWSET ASCKTCVPGY PSAPSSIRIT KSHEGAQLTW 

       670        680        690        700        710        720 
EPPSNTNISG KIIEYSVYLA VKNQSANSAD SQLAFMRVYC GPQADCQVLQ SNLGTAFVDQ 

       730        740        750        760        770        780 
TNKPAIIFRI AARNEKGYGP ATQVRWLQDQ QKIPVRTNYP NNSGFIYQQH GGQQKRARFD 


HQ 

« Hide

References

« Hide 'large scale' references
[1]WormBase Consortium
Johnson D., Stellyes L.
Submitted (JUN-1996) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Bristol N2 EMBL CCD66593.1.
[2]"Genome sequence of the nematode C. elegans: a platform for investigating biology."
Caenorhabditis elegans Sequencing Consortium
Science 282:2012-2018(1998)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Bristol N2 EMBL CCD66593.1.
[3]"Genome sequence of the nematode C. elegans: a platform for investigating biology."
The C. elegans sequencing consortium
Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Bristol N2.
[4]"Selected elements of herpes simplex virus accessory factor HCF are highly conserved in Caenorhabditis elegans."
Liu Y., Hengartner M.O., Herr W.
Mol. Cell. Biol. 19:909-915(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AF072907 mRNA. Translation: AAD12580.1.
FO080769 Genomic DNA. Translation: CCD66593.1.
PIRT29816.
T43277.
RefSeqNP_501279.1. NM_068878.4.
UniGeneCel.17455.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaC46A5.9; C46A5.9; WBGene00001827.
GeneID177560.
KEGGcel:CELE_C46A5.9.

Organism-specific databases

CTD177560.
WormBaseC46A5.9; CE26914; WBGene00001827; hcf-1.

Phylogenomic databases

GeneTreeENSGT00720000108539.
KOK14966.
OMAHTSANIG.
OrthoDBEOG790G05.

Family and domain databases

Gene3D2.120.10.80. 1 hit.
2.130.10.80. 1 hit.
2.60.40.10. 2 hits.
InterProIPR003961. Fibronectin_type3.
IPR015916. Gal_Oxidase_b-propeller.
IPR013783. Ig-like_fold.
IPR015915. Kelch-typ_b-propeller.
[Graphical view]
SMARTSM00060. FN3. 2 hits.
[Graphical view]
SUPFAMSSF49265. SSF49265. 2 hits.
PROSITEPS50853. FN3. 2 hits.
[Graphical view]
ProtoNetSearch...

Other

NextBio897368.
PROG5EC23.

Entry information

Entry nameG5EC23_CAEEL
AccessionPrimary (citable) accession number: G5EC23
Entry history
Integrated into UniProtKB/TrEMBL: December 14, 2011
Last sequence update: December 14, 2011
Last modified: July 9, 2014
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)