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G5E8N4

- G5E8N4_MOUSE

UniProt

G5E8N4 - G5E8N4_MOUSE

Protein
Submitted name:

Sema domain, transmembrane domain (TM), and cytoplasmic domain, (Semaphorin) 6C, isoform CRA_a

Gene

Sema6c

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 23 (01 Oct 2014)
      Sequence version 1 (14 Dec 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. receptor activity Source: InterPro
    2. semaphorin receptor binding Source: MGI

    GO - Biological processi

    1. multicellular organismal development Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Sema domain, transmembrane domain (TM), and cytoplasmic domain, (Semaphorin) 6C, isoform CRA_aImported
    Submitted name:
    Semaphorin-6CImported
    Gene namesi
    Name:Sema6cImported
    ORF Names:mCG_13711Imported
    OrganismiMus musculus (Mouse)Imported
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
    ProteomesiUP000000589: Chromosome 3

    Organism-specific databases

    MGIiMGI:1338032. Sema6c.

    Subcellular locationi

    GO - Cellular componenti

    1. integral component of membrane Source: UniProtKB-KW

    Keywords - Cellular componenti

    Membrane

    PTM / Processingi

    Keywords - PTMi

    Disulfide bondSAAS annotation

    Family & Domainsi

    Sequence similaritiesi

    Contains Sema domain.SAAS annotation

    Keywords - Domaini

    TransmembraneImported

    Phylogenomic databases

    GeneTreeiENSGT00690000101956.
    TreeFamiTF316102.

    Family and domain databases

    Gene3Di2.130.10.10. 2 hits.
    InterProiIPR016201. Plexin-like_fold.
    IPR001627. Semap_dom.
    IPR027231. Semaphorin.
    IPR015514. Semaphorin_6C.
    IPR015943. WD40/YVTN_repeat-like_dom.
    [Graphical view]
    PANTHERiPTHR11036. PTHR11036. 1 hit.
    PTHR11036:SF11. PTHR11036:SF11. 1 hit.
    PfamiPF01403. Sema. 2 hits.
    [Graphical view]
    SMARTiSM00423. PSI. 1 hit.
    SM00630. Sema. 1 hit.
    [Graphical view]
    SUPFAMiSSF101912. SSF101912. 1 hit.
    SSF103575. SSF103575. 1 hit.
    PROSITEiPS51004. SEMA. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    G5E8N4-1 [UniParc]FASTAAdd to Basket

    « Hide

    MPRAPHSMPL LLLLLLLSSL PQAQAAFPQD PTPLLTSDLQ GASPSSWFRG    50
    LEDDAVAAEL GLDFQRFLTL NRTLLVAARD HVFSFDLQAQ EEGEGLVPNK 100
    FLTWRSQDME NCAVRGKLTD ECYNYIRVLV PWNSQTLLAC GTNSFSPMCR 150
    SYGITSLQQE GEELSGQARC PFDATQSTVA IFAEPHFVYA LEHGEHVYFF 200
    FREVSVEDAR LGRVQFSRVA RVCKRDMGGS PRALDRHWTS FLKLRLNCSV 250
    PGDSTFYFDV LQSLTGPVNL HGRSALFGVF TTQTNSIPGS AVCAFYLDDI 300
    ERGFEGKFKE QRSLDGAWTP VSEDKVPSPR PGSCAGVGAA ASFSSSQDLP 350
    DDVLLFIKAH PLLDPAVPPA THQPLLTLTS RALLTQVAVD GMAGPHRNTT 400
    VLFLGSNDGT VLKVLPPGGQ SLGSEPIVLE EIDAYSHARC SGKRSPRAAR 450
    RIIGLELDTE GHRLFVAFPG CIVYLSLSRC ARHGACQRSC LASLDPYCGW 500
    HRSRGCMSIR GPGGTDVDLT GNQESTEHGD CQDGATGSQS GPGDSAYVLL 550
    GPGPSPETPS SPSDAQQGPQ SSTLGAHTQG VRRDLSPASA SRSIPIPLLL 600
    ACVAAAFALG ASVSGLLVSC ACRRANRRRS KDIETPGLPR PLSLRSLARL 650
    HGGGPEPPPP PKDGDAAQTP QLYTTFLPPP DGGSPPELAC LPTPETTPEL 700
    PVKHLRASGG PWEWNQNGNN ASEGPGRPPR GCSGAGGPAP RVLVRPPPPG 750
    CPGQAVEVTT LEELLRYLHG PQPPRKGSEP LASAPFTSRP PASEPGASLF 800
    VDSSPMPRDG VPPLRLDVPP EGKRAAPSGR PALSAPAPRL GVGGSRRLPF 850
    PTHRAPPGLL TRVPSGGPAR YSGGPGRHLL YLGRPEGHRG RSLKRVDVKS 900
    PLSPKPPLAS PPQPAPHGGH FNF 923
    Length:923
    Mass (Da):98,264
    Last modified:December 14, 2011 - v1
    Checksum:i1B081DD77BE428E2
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC131769 Genomic DNA. No translation available.
    AC140190 Genomic DNA. No translation available.
    CH466620 Genomic DNA. Translation: EDL38780.1.
    UniGeneiMm.23662.

    Genome annotation databases

    EnsembliENSMUST00000107217; ENSMUSP00000102835; ENSMUSG00000038777.
    UCSCiuc008qil.1. mouse.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC131769 Genomic DNA. No translation available.
    AC140190 Genomic DNA. No translation available.
    CH466620 Genomic DNA. Translation: EDL38780.1 .
    UniGenei Mm.23662.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSMUST00000107217 ; ENSMUSP00000102835 ; ENSMUSG00000038777 .
    UCSCi uc008qil.1. mouse.

    Organism-specific databases

    MGIi MGI:1338032. Sema6c.

    Phylogenomic databases

    GeneTreei ENSGT00690000101956.
    TreeFami TF316102.

    Miscellaneous databases

    NextBioi 35561218.
    SOURCEi Search...

    Family and domain databases

    Gene3Di 2.130.10.10. 2 hits.
    InterProi IPR016201. Plexin-like_fold.
    IPR001627. Semap_dom.
    IPR027231. Semaphorin.
    IPR015514. Semaphorin_6C.
    IPR015943. WD40/YVTN_repeat-like_dom.
    [Graphical view ]
    PANTHERi PTHR11036. PTHR11036. 1 hit.
    PTHR11036:SF11. PTHR11036:SF11. 1 hit.
    Pfami PF01403. Sema. 2 hits.
    [Graphical view ]
    SMARTi SM00423. PSI. 1 hit.
    SM00630. Sema. 1 hit.
    [Graphical view ]
    SUPFAMi SSF101912. SSF101912. 1 hit.
    SSF103575. SSF103575. 1 hit.
    PROSITEi PS51004. SEMA. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome."
      Mural R.J., Adams M.D., Myers E.W., Smith H.O., Miklos G.L., Wides R., Halpern A., Li P.W., Sutton G.G., Nadeau J., Salzberg S.L., Holt R.A., Kodira C.D., Lu F., Chen L., Deng Z., Evangelista C.C., Gan W.
      , Heiman T.J., Li J., Li Z., Merkulov G.V., Milshina N.V., Naik A.K., Qi R., Shue B.C., Wang A., Wang J., Wang X., Yan X., Ye J., Yooseph S., Zhao Q., Zheng L., Zhu S.C., Biddick K., Bolanos R., Delcher A.L., Dew I.M., Fasulo D., Flanigan M.J., Huson D.H., Kravitz S.A., Miller J.R., Mobarry C.M., Reinert K., Remington K.A., Zhang Q., Zheng X.H., Nusskern D.R., Lai Z., Lei Y., Zhong W., Yao A., Guan P., Ji R.R., Gu Z., Wang Z.Y., Zhong F., Xiao C., Chiang C.C., Yandell M., Wortman J.R., Amanatides P.G., Hladun S.L., Pratts E.C., Johnson J.E., Dodson K.L., Woodford K.J., Evans C.A., Gropman B., Rusch D.B., Venter E., Wang M., Smith T.J., Houck J.T., Tompkins D.E., Haynes C., Jacob D., Chin S.H., Allen D.R., Dahlke C.E., Sanders R., Li K., Liu X., Levitsky A.A., Majoros W.H., Chen Q., Xia A.C., Lopez J.R., Donnelly M.T., Newman M.H., Glodek A., Kraft C.L., Nodell M., Ali F., An H.J., Baldwin-Pitts D., Beeson K.Y., Cai S., Carnes M., Carver A., Caulk P.M., Center A., Chen Y.H., Cheng M.L., Coyne M.D., Crowder M., Danaher S., Davenport L.B., Desilets R., Dietz S.M., Doup L., Dullaghan P., Ferriera S., Fosler C.R., Gire H.C., Gluecksmann A., Gocayne J.D., Gray J., Hart B., Haynes J., Hoover J., Howland T., Ibegwam C., Jalali M., Johns D., Kline L., Ma D.S., MacCawley S., Magoon A., Mann F., May D., McIntosh T.C., Mehta S., Moy L., Moy M.C., Murphy B.J., Murphy S.D., Nelson K.A., Nuri Z., Parker K.A., Prudhomme A.C., Puri V.N., Qureshi H., Raley J.C., Reardon M.S., Regier M.A., Rogers Y.H., Romblad D.L., Schutz J., Scott J.L., Scott R., Sitter C.D., Smallwood M., Sprague A.C., Stewart E., Strong R.V., Suh E., Sylvester K., Thomas R., Tint N.N., Tsonis C., Wang G., Wang G., Williams M.S., Williams S.M., Windsor S.M., Wolfe K., Wu M.M., Zaveri J., Chaturvedi K., Gabrielian A.E., Ke Z., Sun J., Subramanian G., Venter J.C., Pfannkoch C.M., Barnstead M., Stephenson L.D.
      Science 296:1661-1671(2002) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: MixedImported.
    2. Mural R.J., Adams M.D., Myers E.W., Smith H.O., Venter J.C.
      Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: MixedImported.
    3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: C57BL/6JImported.
    4. Ensembl
      Submitted (OCT-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: C57BL/6JImported.

    Entry informationi

    Entry nameiG5E8N4_MOUSE
    AccessioniPrimary (citable) accession number: G5E8N4
    Entry historyi
    Integrated into UniProtKB/TrEMBL: December 14, 2011
    Last sequence update: December 14, 2011
    Last modified: October 1, 2014
    This is version 23 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3