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G5E8N4

- G5E8N4_MOUSE

UniProt

G5E8N4 - G5E8N4_MOUSE

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Protein
Submitted name:

Sema domain, transmembrane domain (TM), and cytoplasmic domain, (Semaphorin) 6C, isoform CRA_a

Gene
Sema6c, mCG_13711
Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. receptor activity Source: InterPro
  2. semaphorin receptor binding Source: MGI

GO - Biological processi

  1. multicellular organismal development Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Sema domain, transmembrane domain (TM), and cytoplasmic domain, (Semaphorin) 6C, isoform CRA_aImported
Submitted name:
Semaphorin-6CImported
Gene namesi
Name:Sema6cImported
ORF Names:mCG_13711Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 3

Organism-specific databases

MGIiMGI:1338032. Sema6c.

Subcellular locationi

GO - Cellular componenti

  1. integral component of membrane Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Keywords - PTMi

Disulfide bondSAAS annotations

Family & Domainsi

Sequence similaritiesi

Contains Sema domain.SAAS annotations

Keywords - Domaini

TransmembraneImported

Phylogenomic databases

GeneTreeiENSGT00690000101956.
TreeFamiTF316102.

Family and domain databases

Gene3Di2.130.10.10. 2 hits.
InterProiIPR016201. Plexin-like_fold.
IPR001627. Semap_dom.
IPR027231. Semaphorin.
IPR015514. Semaphorin_6C.
IPR015943. WD40/YVTN_repeat-like_dom.
[Graphical view]
PANTHERiPTHR11036. PTHR11036. 1 hit.
PTHR11036:SF11. PTHR11036:SF11. 1 hit.
PfamiPF01403. Sema. 2 hits.
[Graphical view]
SMARTiSM00423. PSI. 1 hit.
SM00630. Sema. 1 hit.
[Graphical view]
SUPFAMiSSF101912. SSF101912. 1 hit.
SSF103575. SSF103575. 1 hit.
PROSITEiPS51004. SEMA. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G5E8N4-1 [UniParc]FASTAAdd to Basket

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MPRAPHSMPL LLLLLLLSSL PQAQAAFPQD PTPLLTSDLQ GASPSSWFRG    50
LEDDAVAAEL GLDFQRFLTL NRTLLVAARD HVFSFDLQAQ EEGEGLVPNK 100
FLTWRSQDME NCAVRGKLTD ECYNYIRVLV PWNSQTLLAC GTNSFSPMCR 150
SYGITSLQQE GEELSGQARC PFDATQSTVA IFAEPHFVYA LEHGEHVYFF 200
FREVSVEDAR LGRVQFSRVA RVCKRDMGGS PRALDRHWTS FLKLRLNCSV 250
PGDSTFYFDV LQSLTGPVNL HGRSALFGVF TTQTNSIPGS AVCAFYLDDI 300
ERGFEGKFKE QRSLDGAWTP VSEDKVPSPR PGSCAGVGAA ASFSSSQDLP 350
DDVLLFIKAH PLLDPAVPPA THQPLLTLTS RALLTQVAVD GMAGPHRNTT 400
VLFLGSNDGT VLKVLPPGGQ SLGSEPIVLE EIDAYSHARC SGKRSPRAAR 450
RIIGLELDTE GHRLFVAFPG CIVYLSLSRC ARHGACQRSC LASLDPYCGW 500
HRSRGCMSIR GPGGTDVDLT GNQESTEHGD CQDGATGSQS GPGDSAYVLL 550
GPGPSPETPS SPSDAQQGPQ SSTLGAHTQG VRRDLSPASA SRSIPIPLLL 600
ACVAAAFALG ASVSGLLVSC ACRRANRRRS KDIETPGLPR PLSLRSLARL 650
HGGGPEPPPP PKDGDAAQTP QLYTTFLPPP DGGSPPELAC LPTPETTPEL 700
PVKHLRASGG PWEWNQNGNN ASEGPGRPPR GCSGAGGPAP RVLVRPPPPG 750
CPGQAVEVTT LEELLRYLHG PQPPRKGSEP LASAPFTSRP PASEPGASLF 800
VDSSPMPRDG VPPLRLDVPP EGKRAAPSGR PALSAPAPRL GVGGSRRLPF 850
PTHRAPPGLL TRVPSGGPAR YSGGPGRHLL YLGRPEGHRG RSLKRVDVKS 900
PLSPKPPLAS PPQPAPHGGH FNF 923
Length:923
Mass (Da):98,264
Last modified:December 14, 2011 - v1
Checksum:i1B081DD77BE428E2
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC131769 Genomic DNA. No translation available.
AC140190 Genomic DNA. No translation available.
CH466620 Genomic DNA. Translation: EDL38780.1.
UniGeneiMm.23662.

Genome annotation databases

EnsembliENSMUST00000107217; ENSMUSP00000102835; ENSMUSG00000038777.
UCSCiuc008qil.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC131769 Genomic DNA. No translation available.
AC140190 Genomic DNA. No translation available.
CH466620 Genomic DNA. Translation: EDL38780.1 .
UniGenei Mm.23662.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000107217 ; ENSMUSP00000102835 ; ENSMUSG00000038777 .
UCSCi uc008qil.1. mouse.

Organism-specific databases

MGIi MGI:1338032. Sema6c.

Phylogenomic databases

GeneTreei ENSGT00690000101956.
TreeFami TF316102.

Miscellaneous databases

NextBioi 35561218.
SOURCEi Search...

Family and domain databases

Gene3Di 2.130.10.10. 2 hits.
InterProi IPR016201. Plexin-like_fold.
IPR001627. Semap_dom.
IPR027231. Semaphorin.
IPR015514. Semaphorin_6C.
IPR015943. WD40/YVTN_repeat-like_dom.
[Graphical view ]
PANTHERi PTHR11036. PTHR11036. 1 hit.
PTHR11036:SF11. PTHR11036:SF11. 1 hit.
Pfami PF01403. Sema. 2 hits.
[Graphical view ]
SMARTi SM00423. PSI. 1 hit.
SM00630. Sema. 1 hit.
[Graphical view ]
SUPFAMi SSF101912. SSF101912. 1 hit.
SSF103575. SSF103575. 1 hit.
PROSITEi PS51004. SEMA. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome."
    Mural R.J., Adams M.D., Myers E.W., Smith H.O., Miklos G.L., Wides R., Halpern A., Li P.W., Sutton G.G., Nadeau J., Salzberg S.L., Holt R.A., Kodira C.D., Lu F., Chen L., Deng Z., Evangelista C.C., Gan W.
    , Heiman T.J., Li J., Li Z., Merkulov G.V., Milshina N.V., Naik A.K., Qi R., Shue B.C., Wang A., Wang J., Wang X., Yan X., Ye J., Yooseph S., Zhao Q., Zheng L., Zhu S.C., Biddick K., Bolanos R., Delcher A.L., Dew I.M., Fasulo D., Flanigan M.J., Huson D.H., Kravitz S.A., Miller J.R., Mobarry C.M., Reinert K., Remington K.A., Zhang Q., Zheng X.H., Nusskern D.R., Lai Z., Lei Y., Zhong W., Yao A., Guan P., Ji R.R., Gu Z., Wang Z.Y., Zhong F., Xiao C., Chiang C.C., Yandell M., Wortman J.R., Amanatides P.G., Hladun S.L., Pratts E.C., Johnson J.E., Dodson K.L., Woodford K.J., Evans C.A., Gropman B., Rusch D.B., Venter E., Wang M., Smith T.J., Houck J.T., Tompkins D.E., Haynes C., Jacob D., Chin S.H., Allen D.R., Dahlke C.E., Sanders R., Li K., Liu X., Levitsky A.A., Majoros W.H., Chen Q., Xia A.C., Lopez J.R., Donnelly M.T., Newman M.H., Glodek A., Kraft C.L., Nodell M., Ali F., An H.J., Baldwin-Pitts D., Beeson K.Y., Cai S., Carnes M., Carver A., Caulk P.M., Center A., Chen Y.H., Cheng M.L., Coyne M.D., Crowder M., Danaher S., Davenport L.B., Desilets R., Dietz S.M., Doup L., Dullaghan P., Ferriera S., Fosler C.R., Gire H.C., Gluecksmann A., Gocayne J.D., Gray J., Hart B., Haynes J., Hoover J., Howland T., Ibegwam C., Jalali M., Johns D., Kline L., Ma D.S., MacCawley S., Magoon A., Mann F., May D., McIntosh T.C., Mehta S., Moy L., Moy M.C., Murphy B.J., Murphy S.D., Nelson K.A., Nuri Z., Parker K.A., Prudhomme A.C., Puri V.N., Qureshi H., Raley J.C., Reardon M.S., Regier M.A., Rogers Y.H., Romblad D.L., Schutz J., Scott J.L., Scott R., Sitter C.D., Smallwood M., Sprague A.C., Stewart E., Strong R.V., Suh E., Sylvester K., Thomas R., Tint N.N., Tsonis C., Wang G., Wang G., Williams M.S., Williams S.M., Windsor S.M., Wolfe K., Wu M.M., Zaveri J., Chaturvedi K., Gabrielian A.E., Ke Z., Sun J., Subramanian G., Venter J.C., Pfannkoch C.M., Barnstead M., Stephenson L.D.
    Science 296:1661-1671(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: MixedImported.
  2. Mural R.J., Adams M.D., Myers E.W., Smith H.O., Venter J.C.
    Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: MixedImported.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  4. Ensembl
    Submitted (OCT-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiG5E8N4_MOUSE
AccessioniPrimary (citable) accession number: G5E8N4
Entry historyi
Integrated into UniProtKB/TrEMBL: December 14, 2011
Last sequence update: December 14, 2011
Last modified: June 11, 2014
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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