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G5E8N4 (G5E8N4_MOUSE) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 14. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Sema domain, transmembrane domain (TM), and cytoplasmic domain, (Semaphorin) 6C, isoform CRA_a EMBL EDL38780.1
Submitted name:
Semaphorin-6C Ensembl ENSMUSP00000102835
Gene names
Name:Sema6c EMBL EDL38780.1 MGI 1338032 Ensembl ENSMUSP00000102835
ORF Names:mCG_13711 EMBL EDL38780.1
OrganismMus musculus (Mouse) [Reference proteome] Ensembl ENSMUSP00000102835
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus

Protein attributes

Sequence length923 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Sequence similarities

Contains 1 Sema domain. SAAS SAAS003659

Ontologies

Keywords
   Cellular componentMembrane
   DomainTransmembrane EMBL EDL38780.1
   PTMDisulfide bond SAAS SAAS003659
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processmulticellular organismal development

Inferred from electronic annotation. Source: InterPro

   Cellular_componentintegral to membrane

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionreceptor activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
G5E8N4 [UniParc].

Last modified December 14, 2011. Version 1.
Checksum: 1B081DD77BE428E2

FASTA92398,264
        10         20         30         40         50         60 
MPRAPHSMPL LLLLLLLSSL PQAQAAFPQD PTPLLTSDLQ GASPSSWFRG LEDDAVAAEL 

        70         80         90        100        110        120 
GLDFQRFLTL NRTLLVAARD HVFSFDLQAQ EEGEGLVPNK FLTWRSQDME NCAVRGKLTD 

       130        140        150        160        170        180 
ECYNYIRVLV PWNSQTLLAC GTNSFSPMCR SYGITSLQQE GEELSGQARC PFDATQSTVA 

       190        200        210        220        230        240 
IFAEPHFVYA LEHGEHVYFF FREVSVEDAR LGRVQFSRVA RVCKRDMGGS PRALDRHWTS 

       250        260        270        280        290        300 
FLKLRLNCSV PGDSTFYFDV LQSLTGPVNL HGRSALFGVF TTQTNSIPGS AVCAFYLDDI 

       310        320        330        340        350        360 
ERGFEGKFKE QRSLDGAWTP VSEDKVPSPR PGSCAGVGAA ASFSSSQDLP DDVLLFIKAH 

       370        380        390        400        410        420 
PLLDPAVPPA THQPLLTLTS RALLTQVAVD GMAGPHRNTT VLFLGSNDGT VLKVLPPGGQ 

       430        440        450        460        470        480 
SLGSEPIVLE EIDAYSHARC SGKRSPRAAR RIIGLELDTE GHRLFVAFPG CIVYLSLSRC 

       490        500        510        520        530        540 
ARHGACQRSC LASLDPYCGW HRSRGCMSIR GPGGTDVDLT GNQESTEHGD CQDGATGSQS 

       550        560        570        580        590        600 
GPGDSAYVLL GPGPSPETPS SPSDAQQGPQ SSTLGAHTQG VRRDLSPASA SRSIPIPLLL 

       610        620        630        640        650        660 
ACVAAAFALG ASVSGLLVSC ACRRANRRRS KDIETPGLPR PLSLRSLARL HGGGPEPPPP 

       670        680        690        700        710        720 
PKDGDAAQTP QLYTTFLPPP DGGSPPELAC LPTPETTPEL PVKHLRASGG PWEWNQNGNN 

       730        740        750        760        770        780 
ASEGPGRPPR GCSGAGGPAP RVLVRPPPPG CPGQAVEVTT LEELLRYLHG PQPPRKGSEP 

       790        800        810        820        830        840 
LASAPFTSRP PASEPGASLF VDSSPMPRDG VPPLRLDVPP EGKRAAPSGR PALSAPAPRL 

       850        860        870        880        890        900 
GVGGSRRLPF PTHRAPPGLL TRVPSGGPAR YSGGPGRHLL YLGRPEGHRG RSLKRVDVKS 

       910        920 
PLSPKPPLAS PPQPAPHGGH FNF

« Hide

References

« Hide 'large scale' references
[1]"A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome."
Mural R.J., Adams M.D., Myers E.W., Smith H.O., Miklos G.L., Wides R., Halpern A., Li P.W., Sutton G.G., Nadeau J., Salzberg S.L., Holt R.A., Kodira C.D., Lu F., Chen L., Deng Z., Evangelista C.C., Gan W. expand/collapse author list , Heiman T.J., Li J., Li Z., Merkulov G.V., Milshina N.V., Naik A.K., Qi R., Shue B.C., Wang A., Wang J., Wang X., Yan X., Ye J., Yooseph S., Zhao Q., Zheng L., Zhu S.C., Biddick K., Bolanos R., Delcher A.L., Dew I.M., Fasulo D., Flanigan M.J., Huson D.H., Kravitz S.A., Miller J.R., Mobarry C.M., Reinert K., Remington K.A., Zhang Q., Zheng X.H., Nusskern D.R., Lai Z., Lei Y., Zhong W., Yao A., Guan P., Ji R.R., Gu Z., Wang Z.Y., Zhong F., Xiao C., Chiang C.C., Yandell M., Wortman J.R., Amanatides P.G., Hladun S.L., Pratts E.C., Johnson J.E., Dodson K.L., Woodford K.J., Evans C.A., Gropman B., Rusch D.B., Venter E., Wang M., Smith T.J., Houck J.T., Tompkins D.E., Haynes C., Jacob D., Chin S.H., Allen D.R., Dahlke C.E., Sanders R., Li K., Liu X., Levitsky A.A., Majoros W.H., Chen Q., Xia A.C., Lopez J.R., Donnelly M.T., Newman M.H., Glodek A., Kraft C.L., Nodell M., Ali F., An H.J., Baldwin-Pitts D., Beeson K.Y., Cai S., Carnes M., Carver A., Caulk P.M., Center A., Chen Y.H., Cheng M.L., Coyne M.D., Crowder M., Danaher S., Davenport L.B., Desilets R., Dietz S.M., Doup L., Dullaghan P., Ferriera S., Fosler C.R., Gire H.C., Gluecksmann A., Gocayne J.D., Gray J., Hart B., Haynes J., Hoover J., Howland T., Ibegwam C., Jalali M., Johns D., Kline L., Ma D.S., MacCawley S., Magoon A., Mann F., May D., McIntosh T.C., Mehta S., Moy L., Moy M.C., Murphy B.J., Murphy S.D., Nelson K.A., Nuri Z., Parker K.A., Prudhomme A.C., Puri V.N., Qureshi H., Raley J.C., Reardon M.S., Regier M.A., Rogers Y.H., Romblad D.L., Schutz J., Scott J.L., Scott R., Sitter C.D., Smallwood M., Sprague A.C., Stewart E., Strong R.V., Suh E., Sylvester K., Thomas R., Tint N.N., Tsonis C., Wang G., Wang G., Williams M.S., Williams S.M., Windsor S.M., Wolfe K., Wu M.M., Zaveri J., Chaturvedi K., Gabrielian A.E., Ke Z., Sun J., Subramanian G., Venter J.C., Pfannkoch C.M., Barnstead M., Stephenson L.D.
Science 296:1661-1671(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Mixed EMBL EDL38780.1.
[2]Mural R.J., Adams M.D., Myers E.W., Smith H.O., Venter J.C.
Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Mixed EMBL EDL38780.1.
[3]"Lineage-specific biology revealed by a finished genome assembly of the mouse."
Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X., Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y., Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S. expand/collapse author list , Teague B., Potamousis K., Churas C., Place M., Herschleb J., Runnheim R., Forrest D., Amos-Landgraf J., Schwartz D.C., Cheng Z., Lindblad-Toh K., Eichler E.E., Ponting C.P.
PLoS Biol. 7:E1000112-E1000112(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: C57BL/6J Ensembl ENSMUSP00000102835.
[4]Ensembl
Submitted (OCT-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: C57BL/6J Ensembl ENSMUSP00000102835.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AC131769 Genomic DNA. No translation available.
AC140190 Genomic DNA. No translation available.
CH466620 Genomic DNA. Translation: EDL38780.1.
UniGeneMm.23662.

3D structure databases

SMRG5E8N4. Positions 27-531.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSMUST00000107217; ENSMUSP00000102835; ENSMUSG00000038777.

Organism-specific databases

MGIMGI:1338032. Sema6c.

Phylogenomic databases

GeneTreeENSGT00690000101956.

Family and domain databases

Gene3D2.130.10.10. 2 hits.
InterProIPR003659. Plexin-like.
IPR016201. Plexin-like_fold.
IPR027231. Semaphorin.
IPR001627. Semaphorin/CD100_Ag.
IPR015514. Semaphorin_6C.
IPR015943. WD40/YVTN_repeat-like_dom.
[Graphical view]
PANTHERPTHR11036. PTHR11036. 1 hit.
PTHR11036:SF9. PTHR11036:SF9. 1 hit.
PfamPF01403. Sema. 2 hits.
[Graphical view]
SMARTSM00423. PSI. 1 hit.
SM00630. Sema. 1 hit.
[Graphical view]
SUPFAMSSF103575. Plexin-like_fold. 1 hit.
SSF101912. Sema. 1 hit.
PROSITEPS51004. SEMA. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio35561218.
SOURCESearch...

Entry information

Entry nameG5E8N4_MOUSE
AccessionPrimary (citable) accession number: G5E8N4
Entry history
Integrated into UniProtKB/TrEMBL: December 14, 2011
Last sequence update: December 14, 2011
Last modified: May 1, 2013
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info