G4VNE9 (G4VNE9_SCHMA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative uv excision repair protein rad23 EMBL CCD82179.1

Gene names

ORF Names:

Smp_061920.2 EMBL CCD82179.1

Organism

Schistosoma mansoni (Blood fluke) [Reference proteome]

Taxonomic identifier

6183 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Platyhelminthes › Trematoda › Digenea › Strigeidida › Schistosomatoidea › Schistosomatidae › Schistosoma

Protein attributes

Sequence length	341 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	nucleotide-excision repair Inferred from electronic annotation. Source: InterPro proteasomal ubiquitin-dependent protein catabolic process Inferred from electronic annotation. Source: InterPro
Cellular_component	nucleus Inferred from electronic annotation. Source: InterPro
Molecular_function	damaged DNA binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	G4VNE9 [UniParc]. Last modified December 14, 2011. Version 1. Checksum: 46698109C9C9DCF8	FASTA	341	37,356
	10 20 30 40 50 60 MKVTFKTLMQ QTFVLDFQED DLIGDVKKKI EAKWGSEFDA RTQKLIHSGK VMEDSKSLKD 70 80 90 100 110 120 YKVTESGFVV VMSVSKPSKD TTKEASASVQ SNPTGETKPT TDKKSPVTEA NEAPSITTAP 130 140 150 160 170 180 SSATSTLGFG ESSLVTGENF ERVVKELMSM GFERSLVIQA MRAGFNNPDR AFEYLSSGNI 190 200 210 220 230 240 PNVDIVDQSR EREESESVSP EGPGDTDTPG SESLGSEDPI AALASLPQFQ QMRALVQANP 250 260 270 280 290 300 ELLPQLIQQI GNDNADLFRL IQENEQAFLE FINTPVTGTT RPGSQRQTVL TMTAEERAAV 310 320 330 340 DRLKALGFPE ELVIQAYYAC EKNEDAAANF LLSESLDDEM V

References

[1]

"A systematically improved high quality genome and transcriptome of the human blood fluke Schistosoma mansoni." Protasio A.V., Tsai I.J., Babbage A., Nichol S., Hunt M., Aslett M.A., De Silva N., Velarde G.S., Anderson T.J., Clark R.C., Davidson C., Dillon G.P., Holroyd N.E., LoVerde P.T., Lloyd C., McQuillan J., Oliveira G., Otto T.D. , Parker-Manuel S.J., Quail M.A., Wilson R.A., Zerlotini A., Dunne D.W., Berriman M. PLoS Negl. Trop. Dis. 6:E1455-E1455(2012) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Puerto Rican.

Cross-references

Sequence databases
EMBL GenBank DDBJ	HE601631 Genomic DNA. Translation: CCD82179.1.
RefSeq	XP_002577465.1. XM_002577419.1.
3D structure databases
ProteinModelPortal	G4VNE9.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	8347604.
KEGG	smm:Smp_061920.2.
Organism-specific databases
CTD	8347604.
Phylogenomic databases
KO	K10839.
PhylomeDB	G4VNE9.
Family and domain databases
Gene3D	1.10.10.540. 1 hit.
InterPro	IPR004806. Rad23. IPR006636. STI1_HS-bd. IPR009060. UBA-like. IPR000449. UBA/transl_elong_EF1B_N. IPR015940. UBA/transl_elong_EF1B_N_euk. IPR000626. Ubiquitin. IPR019955. Ubiquitin_supergroup. IPR015360. XPC-bd. [Graphical view]
Pfam	PF00627. UBA. 2 hits. PF00240. ubiquitin. 1 hit. PF09280. XPC-binding. 1 hit. [Graphical view]
PRINTS	PR01839. RAD23PROTEIN.
SMART	SM00727. STI1. 1 hit. SM00165. UBA. 2 hits. SM00213. UBQ. 1 hit. [Graphical view]
SUPFAM	SSF46934. UBA_like. 2 hits. SSF101238. XPC-bd. 1 hit.
TIGRFAMs	TIGR00601. rad23. 1 hit.
PROSITE	PS50030. UBA. 2 hits. PS50053. UBIQUITIN_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

G4VNE9_SCHMA

Accession

Primary (citable) accession number: G4VNE9

Entry history

Integrated into UniProtKB/TrEMBL:	December 14, 2011
Last sequence update:	December 14, 2011
Last modified:	March 6, 2013
This is version 11 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)