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G4VNE9

- G4VNE9_SCHMA

UniProt

G4VNE9 - G4VNE9_SCHMA

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Protein
Submitted name:

Putative uv excision repair protein rad23

Gene

Smp_061920.2

Organism
Schistosoma mansoni (Blood fluke)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. damaged DNA binding Source: InterPro

GO - Biological processi

  1. nucleotide-excision repair Source: InterPro
  2. proteasome-mediated ubiquitin-dependent protein catabolic process Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Putative uv excision repair protein rad23Imported
Gene namesi
ORF Names:Smp_061920.2Imported
OrganismiSchistosoma mansoni (Blood fluke)Imported
Taxonomic identifieri6183 [NCBI]
Taxonomic lineageiEukaryotaMetazoaPlatyhelminthesTrematodaDigeneaStrigeididaSchistosomatoideaSchistosomatidaeSchistosoma
ProteomesiUP000008854: Chromosome W

Subcellular locationi

GO - Cellular componenti

  1. nucleus Source: InterPro
Complete GO annotation...

Structurei

3D structure databases

ProteinModelPortaliG4VNE9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains ubiquitin-like domain.SAAS annotation

Phylogenomic databases

InParanoidiG4VNE9.
PhylomeDBiG4VNE9.

Family and domain databases

Gene3Di1.10.10.540. 1 hit.
InterProiIPR004806. Rad23.
IPR006636. STI1_HS-bd.
IPR009060. UBA-like.
IPR015940. UBA/transl_elong_EF1B_N_euk.
IPR000449. UBA/Ts_N.
IPR000626. Ubiquitin-like.
IPR029071. Ubiquitin-rel_dom.
IPR015360. XPC-bd.
[Graphical view]
PfamiPF00627. UBA. 2 hits.
PF00240. ubiquitin. 1 hit.
PF09280. XPC-binding. 1 hit.
[Graphical view]
PRINTSiPR01839. RAD23PROTEIN.
SMARTiSM00727. STI1. 1 hit.
SM00165. UBA. 2 hits.
SM00213. UBQ. 1 hit.
[Graphical view]
SUPFAMiSSF101238. SSF101238. 1 hit.
SSF46934. SSF46934. 2 hits.
SSF54236. SSF54236. 1 hit.
TIGRFAMsiTIGR00601. rad23. 1 hit.
PROSITEiPS50030. UBA. 2 hits.
PS50053. UBIQUITIN_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G4VNE9-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKVTFKTLMQ QTFVLDFQED DLIGDVKKKI EAKWGSEFDA RTQKLIHSGK
60 70 80 90 100
VMEDSKSLKD YKVTESGFVV VMSVSKPSKD TTKEASASVQ SNPTGETKPT
110 120 130 140 150
TDKKSPVTEA NEAPSITTAP SSATSTLGFG ESSLVTGENF ERVVKELMSM
160 170 180 190 200
GFERSLVIQA MRAGFNNPDR AFEYLSSGNI PNVDIVDQSR EREESESVSP
210 220 230 240 250
EGPGDTDTPG SESLGSEDPI AALASLPQFQ QMRALVQANP ELLPQLIQQI
260 270 280 290 300
GNDNADLFRL IQENEQAFLE FINTPVTGTT RPGSQRQTVL TMTAEERAAV
310 320 330 340
DRLKALGFPE ELVIQAYYAC EKNEDAAANF LLSESLDDEM V
Length:341
Mass (Da):37,356
Last modified:December 14, 2011 - v1
Checksum:i46698109C9C9DCF8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
HE601631 Genomic DNA. Translation: CCD82179.1.

Genome annotation databases

EnsemblMetazoaiSmp_061920.2; Smp_061920.2:pep; Smp_061920.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
HE601631 Genomic DNA. Translation: CCD82179.1 .

3D structure databases

ProteinModelPortali G4VNE9.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblMetazoai Smp_061920.2 ; Smp_061920.2:pep ; Smp_061920 .

Phylogenomic databases

InParanoidi G4VNE9.
PhylomeDBi G4VNE9.

Family and domain databases

Gene3Di 1.10.10.540. 1 hit.
InterProi IPR004806. Rad23.
IPR006636. STI1_HS-bd.
IPR009060. UBA-like.
IPR015940. UBA/transl_elong_EF1B_N_euk.
IPR000449. UBA/Ts_N.
IPR000626. Ubiquitin-like.
IPR029071. Ubiquitin-rel_dom.
IPR015360. XPC-bd.
[Graphical view ]
Pfami PF00627. UBA. 2 hits.
PF00240. ubiquitin. 1 hit.
PF09280. XPC-binding. 1 hit.
[Graphical view ]
PRINTSi PR01839. RAD23PROTEIN.
SMARTi SM00727. STI1. 1 hit.
SM00165. UBA. 2 hits.
SM00213. UBQ. 1 hit.
[Graphical view ]
SUPFAMi SSF101238. SSF101238. 1 hit.
SSF46934. SSF46934. 2 hits.
SSF54236. SSF54236. 1 hit.
TIGRFAMsi TIGR00601. rad23. 1 hit.
PROSITEi PS50030. UBA. 2 hits.
PS50053. UBIQUITIN_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Puerto RicanImported.

Entry informationi

Entry nameiG4VNE9_SCHMA
AccessioniPrimary (citable) accession number: G4VNE9
Entry historyi
Integrated into UniProtKB/TrEMBL: December 14, 2011
Last sequence update: December 14, 2011
Last modified: November 26, 2014
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3