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G4V907 (G4V907_SCHMA) Unreviewed, UniProtKB/TrEMBL

Last modified March 6, 2013. Version 12. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
DNA ligase RuleBase RU000617
EC=6.5.1.1 RuleBase RU000617
Gene names
ORF Names:Smp_148660 EMBL CCD76233.1
OrganismSchistosoma mansoni (Blood fluke) [Reference proteome]
Taxonomic identifier6183 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Platyhelminthes › Trematoda › Digenea › Strigeidida › Schistosomatoidea › Schistosomatidae › Schistosoma

Protein attributes

Sequence length848 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m). RuleBase RU000617

Sequence similarities

Belongs to the ATP-dependent DNA ligase family. RuleBase RU004196

Sequences

Sequence LengthMass (Da)Tools
G4V907 [UniParc].

Last modified December 14, 2011. Version 1.
Checksum: 48EA2647122EA354

FASTA84896,966
        10         20         30         40         50         60 
MDVIFESSRI AKNVSFTTYC RLLEKLASSD GVKTKEKILS RFVILWETQY LALDSISQYP 

        70         80         90        100        110        120 
CGGRASLYLL LRLLIPSHDR SRKAFGLRGQ TLSRLIIKAI GLAPNSLAAR KLSHIHPNSI 

       130        140        150        160        170        180 
HRQTDFADVA YTVLRARCRE DSVLSVKDLN THLDELSTAE SYDMRLQVLR SLLQLTTALE 

       190        200        210        220        230        240 
QKWIIRLIVK RDSGCGLSGK SILRCFHPAA VSVFEVTQDL LPLCERIANI PSPNTFMLTG 

       250        260        270        280        290        300 
YANNLSKSFD VTLFVPFRPM LCERANSGDM LVNSALHLYG KQNQGDTKGL KLLFETKFDG 

       310        320        330        340        350        360 
ERVQLHKSSN SYRYWSRNGL EWTASYGEDG TRDFDRLSAQ LHCGFAQHVT DCILDGEMMI 

       370        380        390        400        410        420 
FSKWSNSIMS KSTKFDVKRS SYQNPEIDNY QPCFIVFDIL YLNSQVCLSY PYHINDFKPI 

       430        440        450        460        470        480 
PIINGIMYVS KWYTASAHQT EVARAFNHLV DNHQEGLIVK IANSPSLYLP GIRTDGGWWK 

       490        500        510        520        530        540 
IKPDYIQGLL EDLDCLIVGG YFHHRGDKII TRVNHFLCAV RNDESYESTS EDNFTLTRFY 

       550        560        570        580        590        600 
TFCKVKSGLT VKQLKEINQL LGKHWKVYDK KHPNSSSTEW LCVNSERPDV WIAPRSSLVL 

       610        620        630        640        650        660 
QLHGAELIQS DSYSCGITLR FPRVVAIRHD KNWRDSLSMS ELIKLNTETE GKLATKRLSI 

       670        680        690        700        710        720 
VPTFSGLADV EHQQSFPDIS SLNSSCSSTN QSSGYHTLNE TTEQQTTELF INVDEPLATS 

       730        740        750        760        770        780 
SPIKQRKIDV CHEHLNYFEN HEICLWLSND IELNKKLELE AIIRRYGGVV VQNPSESTFC 

       790        800        810        820        830        840 
IVADKLTLKL STSQETEFNI WLNKNYSILN TWIRQFPRIP HFIKESWLTE CIMQSSWCSE 


LNHLIEIN

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References

[1]"A systematically improved high quality genome and transcriptome of the human blood fluke Schistosoma mansoni."
Protasio A.V., Tsai I.J., Babbage A., Nichol S., Hunt M., Aslett M.A., De Silva N., Velarde G.S., Anderson T.J., Clark R.C., Davidson C., Dillon G.P., Holroyd N.E., LoVerde P.T., Lloyd C., McQuillan J., Oliveira G., Otto T.D. expand/collapse author list , Parker-Manuel S.J., Quail M.A., Wilson R.A., Zerlotini A., Dunne D.W., Berriman M.
PLoS Negl. Trop. Dis. 6:E1455-E1455(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Puerto Rican.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		HE601624 Genomic DNA. Translation: CCD76233.1.
RefSeqXP_002576259.1. XM_002576213.1.

3D structure databases

ProteinModelPortalG4V907.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID8341490.
KEGGsmm:Smp_148660.

Organism-specific databases

CTD8341490.

Phylogenomic databases

KOK10777.
OMAISHFLCA.
PhylomeDBG4V907.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR001357. BRCT_dom.
IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF00533. BRCT. 1 hit.
PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SMARTSM00292. BRCT. 1 hit.
[Graphical view]
SUPFAMSSF52113. BRCT. 1 hit.
SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR00574. dnl1. 1 hit.
PROSITEPS50172. BRCT. 1 hit.
PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameG4V907_SCHMA
AccessionPrimary (citable) accession number: G4V907
Entry history
Integrated into UniProtKB/TrEMBL: December 14, 2011
Last sequence update: December 14, 2011
Last modified: March 6, 2013
This is version 12 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info