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Protein
Submitted name:

DNA ligase

Gene

ligA

Organism
Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
Name:ligAImported
Ordered Locus Names:MEALZ_3867Imported
OrganismiMethylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z)Imported
Taxonomic identifieri1091494 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaMethylococcalesMethylococcaceaeMethylomicrobium
ProteomesiUP000008315: Chromosome

Structurei

3D structure databases

ProteinModelPortaliG4SZS2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G4SZS2-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MNKANRFNLV RLLLIPIFLF VASAAAIEKP DIMQAKVFDP SIDVTEYWVS
60 70 80 90 100
EKLDGVRARW DGKQLISKNG HLLHAPNWFI EDFPDVTLDG ELWLARGQYQ
110 120 130 140 150
QTVSIVSRKA PHSGWEKIKL MVFDLPDNPK PFSERVAAMR QMAQQRHTPY
160 170 180 190 200
LNFIKQFRVV SPDELKQKLD QVVAEGGEGL MLHHQDSLYQ HGRSNRLLKL
210 220 230 240 250
KPYDDAEAVV IGYRPGKGQF AGKMGSLKVR TENGKEFYIG TGFSQREREA
260 270 280
PPPLGSLISF RHQGYTDKGI PRFAVFIRIR DEP
Length:283
Mass (Da):32,358
Last modified:December 14, 2011 - v1
Checksum:i2E17E6B7E0EDFA3A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO082060 Genomic DNA. Translation: CCE25522.1.
RefSeqiWP_014150271.1. NC_016112.1.
YP_004919105.1. NC_016112.1.

Genome annotation databases

GeneIDi11363750.
KEGGimah:MEALZ_3867.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO082060 Genomic DNA. Translation: CCE25522.1.
RefSeqiWP_014150271.1. NC_016112.1.
YP_004919105.1. NC_016112.1.

3D structure databases

ProteinModelPortaliG4SZS2.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi11363750.
KEGGimah:MEALZ_3867.

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 19304 / NCIMB 14124 / VKM B-2133 / 20ZImported.

Entry informationi

Entry nameiG4SZS2_META2
AccessioniPrimary (citable) accession number: G4SZS2
Entry historyi
Integrated into UniProtKB/TrEMBL: December 14, 2011
Last sequence update: December 14, 2011
Last modified: January 7, 2015
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.