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G4RGY5

- G4RGY5_PELHB

UniProt

G4RGY5 - G4RGY5_PELHB

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Protein
Submitted name:

ATP-dependent DNA ligase LigC

Gene

KKY_3148

Organism
Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPHAL1082931:GJXT-3141-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigCImported
Gene namesi
Ordered Locus Names:KKY_3148Imported
OrganismiPelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2)Imported
Taxonomic identifieri1082931 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesHyphomicrobiaceaePelagibacterium
ProteomesiUP000008850: Chromosome

Structurei

3D structure databases

ProteinModelPortaliG4RGY5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiNRHKSGV.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G4RGY5-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKRFATLLET LALTPSRNRK IEALAAYFRD TPDPDRGYAL AVLTGALSFT
60 70 80 90 100
HVKPARLKEV VLAEVDPHLF ALSYDYIGDL GETIALIWPH KGGTRQLPSL
110 120 130 140 150
SELVELLNTT PKSELALLIA ELLTSAQINE RWALVKLATG GLRIGVSERL
160 170 180 190 200
AKTALAEMSG TDLKDIEEIW HGIKMPYGDL FAWLEGRKPK PEIDHTARFH
210 220 230 240 250
PLMLSNPIDE EKDFSNLDPA DFVAEWKWDG IRVQLILGEG PASLFSRTGE
260 270 280 290 300
DIAPAFPDLV ENVFGHGVLD GELLVGNDFE PAPFNALQQR LNRKSATEKL
310 320 330 340 350
IGEHPAFVRV YDMLFDGDED IRALPWIDRR ARLQSFFADQ TQSRLDLSQL
360 370 380 390 400
LPFSDWDQLG TIRRQGADEN GHEGVMIKLK SAPYVPGRPK GNWFKWKRDP
410 420 430 440 450
NLLDAVLMYA QRGHGKRSSF YSDFTFGAWR GNELVPIGKA YFGFTDAELK
460 470 480 490 500
ELDKWVRAHT IASFGPVREV EKSLVFEVAF DSAQASTRHK SGVALRFPRI
510 520
NRIRWDKPAA EAAHVGEVEA LIPAT
Length:525
Mass (Da):58,874
Last modified:December 14, 2011 - v1
Checksum:i7615EC7D845C0F47
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003075 Genomic DNA. Translation: AEQ53138.1.
RefSeqiYP_004900888.1. NC_016078.1.

Genome annotation databases

EnsemblBacteriaiAEQ53138; AEQ53138; KKY_3148.
GeneIDi11342164.
KEGGiphl:KKY_3148.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003075 Genomic DNA. Translation: AEQ53138.1 .
RefSeqi YP_004900888.1. NC_016078.1.

3D structure databases

ProteinModelPortali G4RGY5.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEQ53138 ; AEQ53138 ; KKY_3148 .
GeneIDi 11342164.
KEGGi phl:KKY_3148.

Phylogenomic databases

KOi K01971.
OMAi NRHKSGV.

Enzyme and pathway databases

BioCyci PHAL1082931:GJXT-3141-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: JCM 15775 / CGMCC 1.7692 / B2Imported.

Entry informationi

Entry nameiG4RGY5_PELHB
AccessioniPrimary (citable) accession number: G4RGY5
Entry historyi
Integrated into UniProtKB/TrEMBL: December 14, 2011
Last sequence update: December 14, 2011
Last modified: October 29, 2014
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3