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G4RGY5

- G4RGY5_PELHB

UniProt

G4RGY5 - G4RGY5_PELHB

Protein
Submitted name:

ATP-dependent DNA ligase LigC

Gene

KKY_3148

Organism
Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 19 (01 Oct 2014)
      Sequence version 1 (14 Dec 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciPHAL1082931:GJXT-3141-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligase LigCImported
    Gene namesi
    Ordered Locus Names:KKY_3148Imported
    OrganismiPelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2)Imported
    Taxonomic identifieri1082931 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesHyphomicrobiaceaePelagibacterium
    ProteomesiUP000008850: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliG4RGY5.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.
    OMAiNRHKSGV.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    G4RGY5-1 [UniParc]FASTAAdd to Basket

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    MKRFATLLET LALTPSRNRK IEALAAYFRD TPDPDRGYAL AVLTGALSFT    50
    HVKPARLKEV VLAEVDPHLF ALSYDYIGDL GETIALIWPH KGGTRQLPSL 100
    SELVELLNTT PKSELALLIA ELLTSAQINE RWALVKLATG GLRIGVSERL 150
    AKTALAEMSG TDLKDIEEIW HGIKMPYGDL FAWLEGRKPK PEIDHTARFH 200
    PLMLSNPIDE EKDFSNLDPA DFVAEWKWDG IRVQLILGEG PASLFSRTGE 250
    DIAPAFPDLV ENVFGHGVLD GELLVGNDFE PAPFNALQQR LNRKSATEKL 300
    IGEHPAFVRV YDMLFDGDED IRALPWIDRR ARLQSFFADQ TQSRLDLSQL 350
    LPFSDWDQLG TIRRQGADEN GHEGVMIKLK SAPYVPGRPK GNWFKWKRDP 400
    NLLDAVLMYA QRGHGKRSSF YSDFTFGAWR GNELVPIGKA YFGFTDAELK 450
    ELDKWVRAHT IASFGPVREV EKSLVFEVAF DSAQASTRHK SGVALRFPRI 500
    NRIRWDKPAA EAAHVGEVEA LIPAT 525
    Length:525
    Mass (Da):58,874
    Last modified:December 14, 2011 - v1
    Checksum:i7615EC7D845C0F47
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003075 Genomic DNA. Translation: AEQ53138.1.
    RefSeqiWP_014132284.1. NC_016078.1.
    YP_004900888.1. NC_016078.1.

    Genome annotation databases

    EnsemblBacteriaiAEQ53138; AEQ53138; KKY_3148.
    GeneIDi11342164.
    KEGGiphl:KKY_3148.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003075 Genomic DNA. Translation: AEQ53138.1 .
    RefSeqi WP_014132284.1. NC_016078.1.
    YP_004900888.1. NC_016078.1.

    3D structure databases

    ProteinModelPortali G4RGY5.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEQ53138 ; AEQ53138 ; KKY_3148 .
    GeneIDi 11342164.
    KEGGi phl:KKY_3148.

    Phylogenomic databases

    KOi K01971.
    OMAi NRHKSGV.

    Enzyme and pathway databases

    BioCyci PHAL1082931:GJXT-3141-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: JCM 15775 / CGMCC 1.7692 / B2Imported.

    Entry informationi

    Entry nameiG4RGY5_PELHB
    AccessioniPrimary (citable) accession number: G4RGY5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: December 14, 2011
    Last sequence update: December 14, 2011
    Last modified: October 1, 2014
    This is version 19 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3