Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

ATP-dependent DNA ligase LigC

Gene

KKY_3148

Organism
Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPHAL1082931:GJXT-3141-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigCImported
Gene namesi
Ordered Locus Names:KKY_3148Imported
OrganismiPelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2)Imported
Taxonomic identifieri1082931 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesHyphomicrobiaceaePelagibacterium
ProteomesiUP000008850 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi1082931.KKY_3148.

Structurei

3D structure databases

ProteinModelPortaliG4RGY5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK10747.
OMAiGQPYPFF.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G4RGY5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKRFATLLET LALTPSRNRK IEALAAYFRD TPDPDRGYAL AVLTGALSFT
60 70 80 90 100
HVKPARLKEV VLAEVDPHLF ALSYDYIGDL GETIALIWPH KGGTRQLPSL
110 120 130 140 150
SELVELLNTT PKSELALLIA ELLTSAQINE RWALVKLATG GLRIGVSERL
160 170 180 190 200
AKTALAEMSG TDLKDIEEIW HGIKMPYGDL FAWLEGRKPK PEIDHTARFH
210 220 230 240 250
PLMLSNPIDE EKDFSNLDPA DFVAEWKWDG IRVQLILGEG PASLFSRTGE
260 270 280 290 300
DIAPAFPDLV ENVFGHGVLD GELLVGNDFE PAPFNALQQR LNRKSATEKL
310 320 330 340 350
IGEHPAFVRV YDMLFDGDED IRALPWIDRR ARLQSFFADQ TQSRLDLSQL
360 370 380 390 400
LPFSDWDQLG TIRRQGADEN GHEGVMIKLK SAPYVPGRPK GNWFKWKRDP
410 420 430 440 450
NLLDAVLMYA QRGHGKRSSF YSDFTFGAWR GNELVPIGKA YFGFTDAELK
460 470 480 490 500
ELDKWVRAHT IASFGPVREV EKSLVFEVAF DSAQASTRHK SGVALRFPRI
510 520
NRIRWDKPAA EAAHVGEVEA LIPAT
Length:525
Mass (Da):58,874
Last modified:December 14, 2011 - v1
Checksum:i7615EC7D845C0F47
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003075 Genomic DNA. Translation: AEQ53138.1.
RefSeqiWP_014132284.1. NC_016078.1.
YP_004900888.1. NC_016078.1.

Genome annotation databases

EnsemblBacteriaiAEQ53138; AEQ53138; KKY_3148.
KEGGiphl:KKY_3148.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003075 Genomic DNA. Translation: AEQ53138.1.
RefSeqiWP_014132284.1. NC_016078.1.
YP_004900888.1. NC_016078.1.

3D structure databases

ProteinModelPortaliG4RGY5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi1082931.KKY_3148.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEQ53138; AEQ53138; KKY_3148.
KEGGiphl:KKY_3148.

Phylogenomic databases

KOiK10747.
OMAiGQPYPFF.

Enzyme and pathway databases

BioCyciPHAL1082931:GJXT-3141-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: JCM 15775 / CGMCC 1.7692 / B2Imported.

Entry informationi

Entry nameiG4RGY5_PELHB
AccessioniPrimary (citable) accession number: G4RGY5
Entry historyi
Integrated into UniProtKB/TrEMBL: December 14, 2011
Last sequence update: December 14, 2011
Last modified: June 24, 2015
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.