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UniProtKB - G4RGY5 (G4RGY5_PELHB)

UniProt

G4RGY5 - G4RGY5_PELHB

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Protein
Submitted name:

ATP-dependent DNA ligase LigC

Gene

KKY_3148

Organism
Pelagibacterium halotolerans (strain DSM 22347 / JCM 15775 / CGMCC 1.7692 / B2)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPHAL1082931:GJXT-3141-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigCImported
Gene namesi
Ordered Locus Names:KKY_3148Imported
OrganismiPelagibacterium halotolerans (strain DSM 22347 / JCM 15775 / CGMCC 1.7692 / B2)Imported
Taxonomic identifieri1082931 [NCBI]
Taxonomic lineageiBacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Hyphomicrobiaceae › Pelagibacterium ›
Proteomesi
  • UP000008850 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi1082931.KKY_3148.

Structurei

3D structure databases

ProteinModelPortaliG4RGY5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini310 – 430121DNA_LIGASE_A3InterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiENOG4107QIM. Bacteria.
COG1793. LUCA.
KOiK10747.
OMAiAAWAVYF.
OrthoDBiPOG091H09SJ.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G4RGY5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKRFATLLET LALTPSRNRK IEALAAYFRD TPDPDRGYAL AVLTGALSFT 
        60         70         80         90        100
HVKPARLKEV VLAEVDPHLF ALSYDYIGDL GETIALIWPH KGGTRQLPSL 
       110        120        130        140        150
SELVELLNTT PKSELALLIA ELLTSAQINE RWALVKLATG GLRIGVSERL 
       160        170        180        190        200
AKTALAEMSG TDLKDIEEIW HGIKMPYGDL FAWLEGRKPK PEIDHTARFH 
       210        220        230        240        250
PLMLSNPIDE EKDFSNLDPA DFVAEWKWDG IRVQLILGEG PASLFSRTGE 
       260        270        280        290        300
DIAPAFPDLV ENVFGHGVLD GELLVGNDFE PAPFNALQQR LNRKSATEKL 
       310        320        330        340        350
IGEHPAFVRV YDMLFDGDED IRALPWIDRR ARLQSFFADQ TQSRLDLSQL 
       360        370        380        390        400
LPFSDWDQLG TIRRQGADEN GHEGVMIKLK SAPYVPGRPK GNWFKWKRDP 
       410        420        430        440        450
NLLDAVLMYA QRGHGKRSSF YSDFTFGAWR GNELVPIGKA YFGFTDAELK 
       460        470        480        490        500
ELDKWVRAHT IASFGPVREV EKSLVFEVAF DSAQASTRHK SGVALRFPRI 
       510        520 
NRIRWDKPAA EAAHVGEVEA LIPAT
Length:525
Mass (Da):58,874
Last modified:December 14, 2011 - v1
Checksum:i7615EC7D845C0F47
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003075 Genomic DNA. Translation: AEQ53138.1.
RefSeqiWP_014132284.1. NC_016078.1.

Genome annotation databases

EnsemblBacteriaiAEQ53138; AEQ53138; KKY_3148.
KEGGiphl:KKY_3148.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003075 Genomic DNA. Translation: AEQ53138.1.
RefSeqiWP_014132284.1. NC_016078.1.

3D structure databases

ProteinModelPortaliG4RGY5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi1082931.KKY_3148.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEQ53138; AEQ53138; KKY_3148.
KEGGiphl:KKY_3148.

Phylogenomic databases

eggNOGiENOG4107QIM. Bacteria.
COG1793. LUCA.
KOiK10747.
OMAiAAWAVYF.
OrthoDBiPOG091H09SJ.

Enzyme and pathway databases

BioCyciPHAL1082931:GJXT-3141-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiG4RGY5_PELHB
AccessioniPrimary (citable) accession number: G4RGY5
Entry historyi
Integrated into UniProtKB/TrEMBL: December 14, 2011
Last sequence update: December 14, 2011
Last modified: September 7, 2016
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.