G4RGY5 (G4RGY5_PELHB) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP-dependent DNA ligase LigC EMBL AEQ53138.1

Gene names

Ordered Locus Names:

KKY_3148 EMBL AEQ53138.1

Organism

Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) [Complete proteome] [HAMAP] EMBL AEQ53138.1

Taxonomic identifier

1082931 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Hyphomicrobiaceae › Pelagibacterium › Pelagibacterium halotolerans

Protein attributes

Sequence length	525 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL AEQ53138.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	G4RGY5 [UniParc]. Last modified December 14, 2011. Version 1. Checksum: 7615EC7D845C0F47	FASTA	525	58,874
	10 20 30 40 50 60 MKRFATLLET LALTPSRNRK IEALAAYFRD TPDPDRGYAL AVLTGALSFT HVKPARLKEV 70 80 90 100 110 120 VLAEVDPHLF ALSYDYIGDL GETIALIWPH KGGTRQLPSL SELVELLNTT PKSELALLIA 130 140 150 160 170 180 ELLTSAQINE RWALVKLATG GLRIGVSERL AKTALAEMSG TDLKDIEEIW HGIKMPYGDL 190 200 210 220 230 240 FAWLEGRKPK PEIDHTARFH PLMLSNPIDE EKDFSNLDPA DFVAEWKWDG IRVQLILGEG 250 260 270 280 290 300 PASLFSRTGE DIAPAFPDLV ENVFGHGVLD GELLVGNDFE PAPFNALQQR LNRKSATEKL 310 320 330 340 350 360 IGEHPAFVRV YDMLFDGDED IRALPWIDRR ARLQSFFADQ TQSRLDLSQL LPFSDWDQLG 370 380 390 400 410 420 TIRRQGADEN GHEGVMIKLK SAPYVPGRPK GNWFKWKRDP NLLDAVLMYA QRGHGKRSSF 430 440 450 460 470 480 YSDFTFGAWR GNELVPIGKA YFGFTDAELK ELDKWVRAHT IASFGPVREV EKSLVFEVAF 490 500 510 520 DSAQASTRHK SGVALRFPRI NRIRWDKPAA EAAHVGEVEA LIPAT

References

[1]

"Complete genome sequence of Pelagibacterium halotolerans B2T." Huo Y.Y., Cheng H., Han X.F., Jiang X.W., Sun C., Zhang X.Q., Zhu X.F., Liu Y.F., Li P.F., Ni P.X., Wu M. J. Bacteriol. 194:197-198(2012) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: JCM 15775 / CGMCC 1.7692 / B2.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP003075 Genomic DNA. Translation: AEQ53138.1.
RefSeq	YP_004900888.1. NC_016078.1.
3D structure databases
ProteinModelPortal	G4RGY5.
ModBase	Search...
MobiDB	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEQ53138; AEQ53138; KKY_3148.
GeneID	11342164.
KEGG	phl:KKY_3148.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01971.
OMA	GQPYPFF.
Enzyme and pathway databases
BioCyc	PHAL1082931:GJXT-3141-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF117018. SSF117018. 1 hit. SSF50249. SSF50249. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

G4RGY5_PELHB

Accession

Primary (citable) accession number: G4RGY5

Entry history

Integrated into UniProtKB/TrEMBL:	December 14, 2011
Last sequence update:	December 14, 2011
Last modified:	December 11, 2013
This is version 15 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)