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G4RCU3

- G4RCU3_PELHB

UniProt

G4RCU3 - G4RCU3_PELHB

Protein
Submitted name:

ATP-dependent DNA ligase clustered with Ku protein, LigD

Gene

KKY_1733

Organism
Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 20 (01 Oct 2014)
      Sequence version 1 (14 Dec 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciPHAL1082931:GJXT-1728-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligase clustered with Ku protein, LigDImported
    Gene namesi
    Ordered Locus Names:KKY_1733Imported
    OrganismiPelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2)Imported
    Taxonomic identifieri1082931 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesHyphomicrobiaceaePelagibacterium
    ProteomesiUP000008850: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliG4RCU3.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.
    OMAiICKAGHE.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    G4RCU3-1 [UniParc]FASTAAdd to Basket

    « Hide

    MARARDLLKE YRAKRDFTKT SEPQGGKGAS SGNVFVVQKH DATRLHYDFR    50
    LEYEGVLKSW AVTRGPSTDP ADKRLAVRTE DHPLDYATFE GKIPQGEYGG 100
    GTVMLWDFGT WEPVEDANKG FKSGKLKIRL KGDRMKGDWA LIRMKPKSGE 150
    KRENWLLIKE HDDFATEGGS KLLDKSTSVS TGRKMSAIEK GEPPVRKSKT 200
    GGRSLPKFVE PQLATLVDSV PGGNDWLFEM KYDGYRCIAV ISGEDVRLYT 250
    RNGLDWTDTF ASLVAPMSLL TESSMLLDGE ICAFDENGKT SFSTLKSHLS 300
    EGGPLVYFAF DLLEIDGKSL RAKPLSERKA ALENVLGRRT RHDPVQFSPD 350
    ISGKGTEVFS AICKAGHEGI IAKHGAAPYR SGRGKSWLKV KCTLRQEFVI 400
    VGWSPSEKRR GVFASLLLAT QQDGKLVYRG RVGTGFPDDL RADLQAMLDK 450
    DARKTAPLTG VPRQMARGAR WVSPRHLAEI AYTELTPDGI LRHPSFLGLR 500
    EDKPAKGIGL EQPGKAEGGH TLSLTEDTGI AAAEKAGIKL SSPDKVLYPG 550
    QGVTKGKLAA YYASVAEAMM PYIANRPLSL VRCPAGRAKQ CFFQKHDTGG 600
    FAQGMDTVQI TEKDGKSDSY FTLDGLEGLL AGVQMGVLEF HIWGSRRDAI 650
    EKPDRIVFDI DPDEGLVFGD VKSAALDIRG RLADLGLETF AMVTGGKGIH 700
    VIAPIARRAE WPAVKAFAAG FAKQMAEDEP ERFTATLSKK ARKGKLFIDY 750
    LRNERGSTAI APYSTRAREG APVAVPVDWN EVERLNAANR FSLEAAVERA 800
    RDNAWPGYGK LRQSLPKSTK 820
    Length:820
    Mass (Da):90,064
    Last modified:December 14, 2011 - v1
    Checksum:i42AE66A94579F814
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003075 Genomic DNA. Translation: AEQ51748.1.
    RefSeqiWP_014130897.1. NC_016078.1.
    YP_004899498.1. NC_016078.1.

    Genome annotation databases

    EnsemblBacteriaiAEQ51748; AEQ51748; KKY_1733.
    GeneIDi11344645.
    KEGGiphl:KKY_1733.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003075 Genomic DNA. Translation: AEQ51748.1 .
    RefSeqi WP_014130897.1. NC_016078.1.
    YP_004899498.1. NC_016078.1.

    3D structure databases

    ProteinModelPortali G4RCU3.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEQ51748 ; AEQ51748 ; KKY_1733 .
    GeneIDi 11344645.
    KEGGi phl:KKY_1733.

    Phylogenomic databases

    KOi K01971.
    OMAi ICKAGHE.

    Enzyme and pathway databases

    BioCyci PHAL1082931:GJXT-1728-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: JCM 15775 / CGMCC 1.7692 / B2Imported.

    Entry informationi

    Entry nameiG4RCU3_PELHB
    AccessioniPrimary (citable) accession number: G4RCU3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: December 14, 2011
    Last sequence update: December 14, 2011
    Last modified: October 1, 2014
    This is version 20 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3