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G4RCU3 (G4RCU3_PELHB) Unreviewed, UniProtKB/TrEMBL

Last modified May 29, 2013. Version 13. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
ATP-dependent DNA ligase clustered with Ku protein, LigD EMBL AEQ51748.1
Gene names
Ordered Locus Names:KKY_1733 EMBL AEQ51748.1
OrganismPelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) [Complete proteome] [HAMAP] EMBL AEQ51748.1
Taxonomic identifier1082931 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Hyphomicrobiaceae › Pelagibacterium ›

Protein attributes

Sequence length820 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL AEQ51748.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

DNA primase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
G4RCU3 [UniParc].

Last modified December 14, 2011. Version 1.
Checksum: 42AE66A94579F814

FASTA82090,064
        10         20         30         40         50         60 
MARARDLLKE YRAKRDFTKT SEPQGGKGAS SGNVFVVQKH DATRLHYDFR LEYEGVLKSW 

        70         80         90        100        110        120 
AVTRGPSTDP ADKRLAVRTE DHPLDYATFE GKIPQGEYGG GTVMLWDFGT WEPVEDANKG 

       130        140        150        160        170        180 
FKSGKLKIRL KGDRMKGDWA LIRMKPKSGE KRENWLLIKE HDDFATEGGS KLLDKSTSVS 

       190        200        210        220        230        240 
TGRKMSAIEK GEPPVRKSKT GGRSLPKFVE PQLATLVDSV PGGNDWLFEM KYDGYRCIAV 

       250        260        270        280        290        300 
ISGEDVRLYT RNGLDWTDTF ASLVAPMSLL TESSMLLDGE ICAFDENGKT SFSTLKSHLS 

       310        320        330        340        350        360 
EGGPLVYFAF DLLEIDGKSL RAKPLSERKA ALENVLGRRT RHDPVQFSPD ISGKGTEVFS 

       370        380        390        400        410        420 
AICKAGHEGI IAKHGAAPYR SGRGKSWLKV KCTLRQEFVI VGWSPSEKRR GVFASLLLAT 

       430        440        450        460        470        480 
QQDGKLVYRG RVGTGFPDDL RADLQAMLDK DARKTAPLTG VPRQMARGAR WVSPRHLAEI 

       490        500        510        520        530        540 
AYTELTPDGI LRHPSFLGLR EDKPAKGIGL EQPGKAEGGH TLSLTEDTGI AAAEKAGIKL 

       550        560        570        580        590        600 
SSPDKVLYPG QGVTKGKLAA YYASVAEAMM PYIANRPLSL VRCPAGRAKQ CFFQKHDTGG 

       610        620        630        640        650        660 
FAQGMDTVQI TEKDGKSDSY FTLDGLEGLL AGVQMGVLEF HIWGSRRDAI EKPDRIVFDI 

       670        680        690        700        710        720 
DPDEGLVFGD VKSAALDIRG RLADLGLETF AMVTGGKGIH VIAPIARRAE WPAVKAFAAG 

       730        740        750        760        770        780 
FAKQMAEDEP ERFTATLSKK ARKGKLFIDY LRNERGSTAI APYSTRAREG APVAVPVDWN 

       790        800        810        820 
EVERLNAANR FSLEAAVERA RDNAWPGYGK LRQSLPKSTK

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References

[1]"Complete Genome Sequence of Pelagibacterium halotolerans B2T."
Huo Y.Y., Cheng H., Han X.F., Jiang X.W., Sun C., Zhang X.Q., Zhu X.F., Liu Y.F., Li P.F., Ni P.X., Wu M.
J. Bacteriol. 194:197-198(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: JCM 15775 / CGMCC 1.7692 / B2.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP003075 Genomic DNA. Translation: AEQ51748.1.
RefSeqYP_004899498.1. NC_016078.1.

3D structure databases

ProteinModelPortalG4RCU3.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEQ51748; AEQ51748; KKY_1733.
GeneID11344645.
KEGGphl:KKY_1733.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycPHAL1082931:GJXT-1728-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameG4RCU3_PELHB
AccessionPrimary (citable) accession number: G4RCU3
Entry history
Integrated into UniProtKB/TrEMBL: December 14, 2011
Last sequence update: December 14, 2011
Last modified: May 29, 2013
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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