Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

ATP-dependent DNA ligase clustered with Ku protein, LigD

Gene

KKY_1733

Organism
Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPHAL1082931:GJXT-1728-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase clustered with Ku protein, LigDImported
Gene namesi
Ordered Locus Names:KKY_1733Imported
OrganismiPelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2)Imported
Taxonomic identifieri1082931 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesHyphomicrobiaceaePelagibacterium
ProteomesiUP000008850 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi1082931.KKY_1733.

Structurei

3D structure databases

ProteinModelPortaliG4RCU3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiDWTIRSI.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G4RCU3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MARARDLLKE YRAKRDFTKT SEPQGGKGAS SGNVFVVQKH DATRLHYDFR
60 70 80 90 100
LEYEGVLKSW AVTRGPSTDP ADKRLAVRTE DHPLDYATFE GKIPQGEYGG
110 120 130 140 150
GTVMLWDFGT WEPVEDANKG FKSGKLKIRL KGDRMKGDWA LIRMKPKSGE
160 170 180 190 200
KRENWLLIKE HDDFATEGGS KLLDKSTSVS TGRKMSAIEK GEPPVRKSKT
210 220 230 240 250
GGRSLPKFVE PQLATLVDSV PGGNDWLFEM KYDGYRCIAV ISGEDVRLYT
260 270 280 290 300
RNGLDWTDTF ASLVAPMSLL TESSMLLDGE ICAFDENGKT SFSTLKSHLS
310 320 330 340 350
EGGPLVYFAF DLLEIDGKSL RAKPLSERKA ALENVLGRRT RHDPVQFSPD
360 370 380 390 400
ISGKGTEVFS AICKAGHEGI IAKHGAAPYR SGRGKSWLKV KCTLRQEFVI
410 420 430 440 450
VGWSPSEKRR GVFASLLLAT QQDGKLVYRG RVGTGFPDDL RADLQAMLDK
460 470 480 490 500
DARKTAPLTG VPRQMARGAR WVSPRHLAEI AYTELTPDGI LRHPSFLGLR
510 520 530 540 550
EDKPAKGIGL EQPGKAEGGH TLSLTEDTGI AAAEKAGIKL SSPDKVLYPG
560 570 580 590 600
QGVTKGKLAA YYASVAEAMM PYIANRPLSL VRCPAGRAKQ CFFQKHDTGG
610 620 630 640 650
FAQGMDTVQI TEKDGKSDSY FTLDGLEGLL AGVQMGVLEF HIWGSRRDAI
660 670 680 690 700
EKPDRIVFDI DPDEGLVFGD VKSAALDIRG RLADLGLETF AMVTGGKGIH
710 720 730 740 750
VIAPIARRAE WPAVKAFAAG FAKQMAEDEP ERFTATLSKK ARKGKLFIDY
760 770 780 790 800
LRNERGSTAI APYSTRAREG APVAVPVDWN EVERLNAANR FSLEAAVERA
810 820
RDNAWPGYGK LRQSLPKSTK
Length:820
Mass (Da):90,064
Last modified:December 14, 2011 - v1
Checksum:i42AE66A94579F814
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003075 Genomic DNA. Translation: AEQ51748.1.
RefSeqiWP_014130897.1. NC_016078.1.
YP_004899498.1. NC_016078.1.

Genome annotation databases

EnsemblBacteriaiAEQ51748; AEQ51748; KKY_1733.
KEGGiphl:KKY_1733.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003075 Genomic DNA. Translation: AEQ51748.1.
RefSeqiWP_014130897.1. NC_016078.1.
YP_004899498.1. NC_016078.1.

3D structure databases

ProteinModelPortaliG4RCU3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi1082931.KKY_1733.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEQ51748; AEQ51748; KKY_1733.
KEGGiphl:KKY_1733.

Phylogenomic databases

KOiK01971.
OMAiDWTIRSI.

Enzyme and pathway databases

BioCyciPHAL1082931:GJXT-1728-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: JCM 15775 / CGMCC 1.7692 / B2Imported.

Entry informationi

Entry nameiG4RCU3_PELHB
AccessioniPrimary (citable) accession number: G4RCU3
Entry historyi
Integrated into UniProtKB/TrEMBL: December 14, 2011
Last sequence update: December 14, 2011
Last modified: June 24, 2015
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.