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Protein
Submitted name:

DNA ligase

Gene

GNIT_2788

Organism
Glaciecola nitratireducens (strain JCM 12485 / KCTC 12276 / FR1064)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciGNIT1085623:GJU2-2788-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligaseImported
Gene namesi
Ordered Locus Names:GNIT_2788Imported
OrganismiGlaciecola nitratireducens (strain JCM 12485 / KCTC 12276 / FR1064)Imported
Taxonomic identifieri1085623 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesAlteromonadaceaeGlaciecola
ProteomesiUP000009282: Chromosome

Structurei

3D structure databases

ProteinModelPortaliG4QIH1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK10747.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.

Sequencei

Sequence statusi: Complete.

G4QIH1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIFYSKFSIA KAILLLLASF VLALFLATES AQAFNDTSLP NVQLAEVYDK
60 70 80 90 100
QNVQDYLISE KYDGVRAIWK DRTLQSRSGN IIHAPTWFTE GLPDVWLDGE
110 120 130 140 150
LWYRRGDFEY VVSTVNKDIP VNSEWKNITY MVFDAPNYNA DFQSRATFYT
160 170 180 190 200
SLIQSLHLAH VKAVDQFSLT TNAELSAYLK NYVAEGAEGL MLQKADAKFA
210 220 230 240 250
DGRSSNLLKL KPYMDAEARV LAHLEGKGKY RDKVGAILVL YSNASGSKIT
260 270 280 290
FKIGSGFSDE ERANPPPIGS VVTFKYHGFT KRGVPRFASY LRMYKPS
Length:297
Mass (Da):33,457
Last modified:December 14, 2011 - v1
Checksum:iD92511CF401541BE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003060 Genomic DNA. Translation: AEP30885.1.
RefSeqiYP_004872878.1. NC_016041.1.

Genome annotation databases

EnsemblBacteriaiAEP30885; AEP30885; GNIT_2788.
GeneIDi11182319.
KEGGigni:GNIT_2788.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003060 Genomic DNA. Translation: AEP30885.1.
RefSeqiYP_004872878.1. NC_016041.1.

3D structure databases

ProteinModelPortaliG4QIH1.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEP30885; AEP30885; GNIT_2788.
GeneIDi11182319.
KEGGigni:GNIT_2788.

Phylogenomic databases

KOiK10747.

Enzyme and pathway databases

BioCyciGNIT1085623:GJU2-2788-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of seawater bacterium Glaciecola nitratireducens FR1064T."
    Bian F., Qin Q.L., Xie B.B., Shu Y.L., Zhang X.Y., Yu Y., Chen B., Chen X.L., Zhou B.C., Zhang Y.Z.
    J. Bacteriol. 193:7006-7007(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: JCM 12485 / KCTC 12276 / FR1064Imported.

Entry informationi

Entry nameiG4QIH1_GLANF
AccessioniPrimary (citable) accession number: G4QIH1
Entry historyi
Integrated into UniProtKB/TrEMBL: December 14, 2011
Last sequence update: December 14, 2011
Last modified: March 4, 2015
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.