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G4NV71 (G4NV71_BACPT) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 13. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=6.5.1.1 EMBL AEP86309.1
Gene names
Name:ykoU EMBL AEP86309.1
Ordered Locus Names:GYO_1664 EMBL AEP86309.1
OrganismBacillus subtilis subsp. spizizenii (strain TU-B-10) [Complete proteome] [HAMAP] EMBL AEP86309.1
Taxonomic identifier1052585 [NCBI]
Taxonomic lineageBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus

Protein attributes

Sequence length607 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL AEP86309.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
G4NV71 [UniParc].

Last modified December 14, 2011. Version 1.
Checksum: 224B25EB2602EC06

FASTA60769,929
        10         20         30         40         50         60 
MQPVLTSSPP IGAEWRYEVK YDGYRCILRI HSAGVTLTSR NGLELNSSFP EITQFAKTAF 

        70         80         90        100        110        120 
LHMEKDLPLT LDGEIVCLVN PCRSDFEHIQ VRGRLKRPDK IQESANARPC CFLAFDLLER 

       130        140        150        160        170        180 
RGEDISPLSY LDRKKSLYDL MSAAKLPASP DPYAKETIQY IPCYDHFDPL WRMVTKFDGE 

       190        200        210        220        230        240 
GIVAKKTNSK WLERKRSSDW LKYKNFKQAY VCITGFNPNN GFLTVSVLKN GVMTPIASVS 

       250        260        270        280        290        300 
HGMRDEEKNA IREIMEQHGH KTSSGEFTLE PSICATVQYL TILQGTLREV SFVGFEFHMD 

       310        320        330        340        350        360 
WTECTYAQVI RHSKSVHPKL QFTSLDKIIF EKNKKTKEDF IQYMIEVSDY LFPFLKNRAV 

       370        380        390        400        410        420 
TVIRYPHGSR SESFFQKNKP DYAPDFVQSF YDGSHEHIVC EDMSTLLWLA NQLALEFHVP 

       430        440        450        460        470        480 
FQTIQSRRPA EIVIDLDPPS RDDFLMAVQA ANELKRLFDS FGITSFPKLS GNKGIQLYIP 

       490        500        510        520        530        540 
LSPEAFTYEE TRQFTQLIAE YCTNAFPELF TTERLIKNRH GKLYLDYLQH AEGKTIICPY 

       550        560        570        580        590        600 
STRGNDLGTV AAPLYWHEVQ TSLTPAMFTI DTVVDRIKKQ GCPFFDFYRN PQDEPLNAIL 


HQLKKKS 

« Hide

References

[1]"Whole-genome sequences of Bacillus subtilis and close relatives."
Earl A.M., Eppinger M., Fricke W.F., Rosovitz M.J., Rasko D.A., Daugherty S., Losick R., Kolter R., Ravel J.
J. Bacteriol. 194:2378-2379(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: TU-B-10 EMBL AEP86309.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002905 Genomic DNA. Translation: AEP86309.1.
RefSeqYP_004876941.1. NC_016047.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEP86309; AEP86309; GYO_1664.
GeneID11239211.
KEGGbst:GYO_1664.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycBSUB1052585:GJWW-1651-MONOMER.

Family and domain databases

InterProIPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014145. LigD_pol.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
TIGRFAMsTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameG4NV71_BACPT
AccessionPrimary (citable) accession number: G4NV71
Entry history
Integrated into UniProtKB/TrEMBL: December 14, 2011
Last sequence update: December 14, 2011
Last modified: April 16, 2014
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)