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Protein
Submitted name:

Ligand-dependent nuclear receptor-interacting factor 1

Gene

Lrif1

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Biological processi

  1. regulation of transcription, DNA-templated Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Ligand-dependent nuclear receptor-interacting factor 1Imported
Submitted name:
MCG22164, isoform CRA_aImported
Gene namesi
Name:Lrif1Imported
Synonyms:4933421E11RikImported
ORF Names:mCG_22164Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 3

Organism-specific databases

MGIiMGI:2445214. Lrif1.

Subcellular locationi

GO - Cellular componenti

  1. actin cytoskeleton Source: MGI
  2. microtubule organizing center Source: MGI
  3. nucleus Source: MGI
Complete GO annotation...

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00390000017353.

Family and domain databases

InterProiIPR026191. LRIF1.
[Graphical view]
PANTHERiPTHR16131. PTHR16131. 1 hit.

Sequencei

Sequence statusi: Complete.

G3X9P5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAGGTRARSR ANKAKPTQYE MASIVKKEIQ EKGNNKKYSQ GSHTNIKASC
60 70 80 90 100
LKNDAEFKKL FGLTKDLRVC LTRIPDHLSS GKSFNSFNSL MKSSSYKDAN
110 120 130 140 150
IVVKKEEKKQ SFSKKRKAET MKMGNTKKIK IENADDTVMS IMNGTDVASS
160 170 180 190 200
QPLSSILPTS DISQHNIVTS HSTTREDKRT EAEHCSHEKQ EKGTLSSSTS
210 220 230 240 250
FEQSTFLNKN FMEDIFPVTP PELEETIRDE KIRRLKQILR EKEAALEELR

KKMYQKQ
Length:257
Mass (Da):29,218
Last modified:November 16, 2011 - v1
Checksum:i5EC261D4831CFD90
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC117200 Genomic DNA. No translation available.
AC117255 Genomic DNA. No translation available.
CH466607 Genomic DNA. Translation: EDL01880.1.
RefSeqiNP_001034567.1. NM_001039478.1.
UniGeneiMm.259638.

Genome annotation databases

EnsembliENSMUST00000098751; ENSMUSP00000096347; ENSMUSG00000056260.
GeneIDi321000.
KEGGimmu:321000.
UCSCiuc008qwh.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC117200 Genomic DNA. No translation available.
AC117255 Genomic DNA. No translation available.
CH466607 Genomic DNA. Translation: EDL01880.1.
RefSeqiNP_001034567.1. NM_001039478.1.
UniGeneiMm.259638.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000098751; ENSMUSP00000096347; ENSMUSG00000056260.
GeneIDi321000.
KEGGimmu:321000.
UCSCiuc008qwh.1. mouse.

Organism-specific databases

CTDi55791.
MGIiMGI:2445214. Lrif1.

Phylogenomic databases

GeneTreeiENSGT00390000017353.

Miscellaneous databases

NextBioi397833.
SOURCEiSearch...

Family and domain databases

InterProiIPR026191. LRIF1.
[Graphical view]
PANTHERiPTHR16131. PTHR16131. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome."
    Mural R.J., Adams M.D., Myers E.W., Smith H.O., Miklos G.L., Wides R., Halpern A., Li P.W., Sutton G.G., Nadeau J., Salzberg S.L., Holt R.A., Kodira C.D., Lu F., Chen L., Deng Z., Evangelista C.C., Gan W.
    , Heiman T.J., Li J., Li Z., Merkulov G.V., Milshina N.V., Naik A.K., Qi R., Shue B.C., Wang A., Wang J., Wang X., Yan X., Ye J., Yooseph S., Zhao Q., Zheng L., Zhu S.C., Biddick K., Bolanos R., Delcher A.L., Dew I.M., Fasulo D., Flanigan M.J., Huson D.H., Kravitz S.A., Miller J.R., Mobarry C.M., Reinert K., Remington K.A., Zhang Q., Zheng X.H., Nusskern D.R., Lai Z., Lei Y., Zhong W., Yao A., Guan P., Ji R.R., Gu Z., Wang Z.Y., Zhong F., Xiao C., Chiang C.C., Yandell M., Wortman J.R., Amanatides P.G., Hladun S.L., Pratts E.C., Johnson J.E., Dodson K.L., Woodford K.J., Evans C.A., Gropman B., Rusch D.B., Venter E., Wang M., Smith T.J., Houck J.T., Tompkins D.E., Haynes C., Jacob D., Chin S.H., Allen D.R., Dahlke C.E., Sanders R., Li K., Liu X., Levitsky A.A., Majoros W.H., Chen Q., Xia A.C., Lopez J.R., Donnelly M.T., Newman M.H., Glodek A., Kraft C.L., Nodell M., Ali F., An H.J., Baldwin-Pitts D., Beeson K.Y., Cai S., Carnes M., Carver A., Caulk P.M., Center A., Chen Y.H., Cheng M.L., Coyne M.D., Crowder M., Danaher S., Davenport L.B., Desilets R., Dietz S.M., Doup L., Dullaghan P., Ferriera S., Fosler C.R., Gire H.C., Gluecksmann A., Gocayne J.D., Gray J., Hart B., Haynes J., Hoover J., Howland T., Ibegwam C., Jalali M., Johns D., Kline L., Ma D.S., MacCawley S., Magoon A., Mann F., May D., McIntosh T.C., Mehta S., Moy L., Moy M.C., Murphy B.J., Murphy S.D., Nelson K.A., Nuri Z., Parker K.A., Prudhomme A.C., Puri V.N., Qureshi H., Raley J.C., Reardon M.S., Regier M.A., Rogers Y.H., Romblad D.L., Schutz J., Scott J.L., Scott R., Sitter C.D., Smallwood M., Sprague A.C., Stewart E., Strong R.V., Suh E., Sylvester K., Thomas R., Tint N.N., Tsonis C., Wang G., Wang G., Williams M.S., Williams S.M., Windsor S.M., Wolfe K., Wu M.M., Zaveri J., Chaturvedi K., Gabrielian A.E., Ke Z., Sun J., Subramanian G., Venter J.C., Pfannkoch C.M., Barnstead M., Stephenson L.D.
    Science 296:1661-1671(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: MixedImported.
  2. Mural R.J., Adams M.D., Myers E.W., Smith H.O., Venter J.C.
    Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: MixedImported.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  4. Ensembl
    Submitted (SEP-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiG3X9P5_MOUSE
AccessioniPrimary (citable) accession number: G3X9P5
Entry historyi
Integrated into UniProtKB/TrEMBL: November 16, 2011
Last sequence update: November 16, 2011
Last modified: March 4, 2015
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.