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Protein
Submitted name:

SRY box 17

Gene

Sox17

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 5 out of 5-Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi68 – 136HMG boxPROSITE-ProRule annotationAdd BLAST69

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation

Enzyme and pathway databases

ReactomeiR-RNO-3769402. Deactivation of the beta-catenin transactivating complex.

Names & Taxonomyi

Protein namesi
Submitted name:
SRY box 17Imported
Submitted name:
SRY-box containing gene 17 (Predicted), isoform CRA_aImported
Gene namesi
Name:Sox17Imported
Synonyms:Sox17_predictedImported
ORF Names:rCG_30490Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 5

Organism-specific databases

RGDi1305371. Sox17.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotation

Expressioni

Gene expression databases

BgeeiENSRNOG00000027357.

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000033962.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini68 – 136HMG boxInterPro annotationAdd BLAST69
Domaini278 – 422Sox C-terminalInterPro annotationAdd BLAST145

Phylogenomic databases

eggNOGiENOG410IPZH. Eukaryota.
ENOG41114B8. LUCA.
GeneTreeiENSGT00760000118988.
KOiK04495.
OMAiHMGGHYR.
OrthoDBiEOG091G0CYU.

Family and domain databases

Gene3Di1.10.30.10. 1 hit.
InterProiView protein in InterPro
IPR009071. HMG_box_dom.
IPR036910. HMG_box_dom_sf.
IPR033392. Sox7/17/18_central.
IPR021934. Sox_C.
PfamiView protein in Pfam
PF00505. HMG_box. 1 hit.
PF12067. Sox17_18_mid. 1 hit.
SMARTiView protein in SMART
SM00398. HMG. 1 hit.
SUPFAMiSSF47095. SSF47095. 1 hit.
PROSITEiView protein in PROSITE
PS50118. HMG_BOX_2. 1 hit.
PS51516. SOX_C. 1 hit.

Sequencei

Sequence statusi: Complete.

G3V923-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSPDAGYAS DDQSQPRSAQ PAVMAGLGPC PWAESLSSLG DVKVKGEVVA
60 70 80 90 100
SSGAPAGTSS RAKAESRIRR PMNAFMVWAK DERKRLAQQN PDLHNAELSK
110 120 130 140 150
MLGKSWKALT LAEKRPFVEE AERLRVQHMQ DHPNYKYRPR RRKQVKRMKR
160 170 180 190 200
VEGGFLHALA EPQAGALGPE GGRVAMDGLG LPFPEPGYPA GPPLMSPHMG
210 220 230 240 250
AHYRDCQGLG APALDGYPLP TPDTSPLDGV EQDPAFFAAP LPGDCPAAGA
260 270 280 290 300
YTYAQVSDYA VPAEPSAGPM RVGPDPSGSA MPGILAPPSA LHLYYGAMGS
310 320 330 340 350
PAASAGRGFH AQPQQPLQPQ PPPPPPPPPP PQQHPTHGPG QPSPPPEALP
360 370 380 390 400
CRDGTEPNQP TELLGEVDRT EFEQYLHFVY KPEMGLPYQG HDCGVNLSDS
410 420
HGAISSVVSD ASSAVYYCNY PDI
Length:423
Mass (Da):45,039
Last modified:November 16, 2011 - v1
Checksum:iF035869391F48525
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07047008 Genomic DNA. No translation available.
CH473984 Genomic DNA. Translation: EDM11594.1.
CH473984 Genomic DNA. Translation: EDM11595.1.
RefSeqiNP_001101372.1. NM_001107902.1.
XP_006237871.1. XM_006237809.3.
XP_006237874.1. XM_006237812.3.
XP_008761759.1. XM_008763537.2.
XP_008761760.1. XM_008763538.2.
XP_017448812.1. XM_017593323.1.
XP_017448813.1. XM_017593324.1.
XP_017448814.1. XM_017593325.1.
XP_017448815.1. XM_017593326.1.
XP_017448816.1. XM_017593327.1.
UniGeneiRn.7884.

Genome annotation databases

EnsembliENSRNOT00000033116; ENSRNOP00000033962; ENSRNOG00000027357.
GeneIDi312936.
KEGGirno:312936.

Similar proteinsi

Entry informationi

Entry nameiG3V923_RAT
AccessioniPrimary (citable) accession number: G3V923
Entry historyiIntegrated into UniProtKB/TrEMBL: November 16, 2011
Last sequence update: November 16, 2011
Last modified: January 31, 2018
This is version 51 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported