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G3V7J4

- G3V7J4_RAT

UniProt

G3V7J4 - G3V7J4_RAT

Protein
Submitted name:

Hairless homolog (Mouse), isoform CRA_b

Gene

Hr

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 17 (01 Oct 2014)
      Sequence version 1 (16 Nov 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. transcription corepressor activity Source: Ensembl

    GO - Biological processi

    1. negative regulation of transcription, DNA-templated Source: Ensembl

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Hairless homolog (Mouse), isoform CRA_bImported
    Submitted name:
    Lysine-specific demethylase hairlessImported
    Gene namesi
    Name:HrImported
    Synonyms:hrImported
    ORF Names:rCG_36905Imported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
    ProteomesiUP000002494: Chromosome 15

    Organism-specific databases

    RGDi620634. Hr.

    Subcellular locationi

    GO - Cellular componenti

    1. nuclear body Source: Ensembl

    Family & Domainsi

    Sequence similaritiesi

    Contains JmjC domain.SAAS annotation

    Phylogenomic databases

    GeneTreeiENSGT00530000063039.
    OMAiSTAVKLC.
    OrthoDBiEOG7PZRWJ.
    TreeFamiTF324723.

    Family and domain databases

    InterProiIPR003347. JmjC_dom.
    [Graphical view]
    PfamiPF02373. JmjC. 1 hit.
    [Graphical view]
    SMARTiSM00558. JmjC. 1 hit.
    [Graphical view]
    PROSITEiPS51184. JMJC. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    G3V7J4-1 [UniParc]FASTAAdd to Basket

    « Hide

    MGLRSSCFVL TLQDPPLGEP HEGRRVMESM PSFLKDTPAW EKTAPVNGIV     50
    GQEPGTSPQD GLHHGALCLG EPVPFWRGVL SAPDSWLPPG FLQGPKDTLS 100
    VVEGEGSRNG ERKANWLGSK EGLRWKEAML AHPLAFCGPA CPPRYGPLIP 150
    EHSSGHPKSD PVAFRPLHCP FLLETKILER APFWVPTCLP PYLMSSLPPE 200
    RSYDWPLAPS PWVYSGSQPK VPSAFSLGSK GFYHKDPNIL RPAKEPLAAS 250
    ESGMLGLAPG GHLQQACDAE GPSLHQRDGE TGAGRQQNLC PVFLGYPDTV 300
    PRTPWPSCPP GLVHTLGNVW AGPGSNSFGY QLGPPVTPRC PSPGPPTPPG 350
    GCCSSHLPAR EGDPGPCRKC QDSPEGSSSG PGESSEERNK AGSRASPPSH 400
    HTKLKKTWLT RHSEQFECPG GCPGKGESPA TGLRALKRAG SPEVQGARGP 450
    APKRPSHTFP GTGRQGARAW QETPETSTGS KAEAQQQEEQ RGPRDGRIRL 500
    RESRLEDTSC QHHLAGVTQC PSCVQAAGEV EILTSHSQKS HRLPLEEKPL 550
    EEDSCATSEE GGGSSPEASI NKGLAKHLLS GLGDRLCRLL RKEREALAWA 600
    QREGQGPAMT EDSPGIPHCC SRCHHGLFNT HWRCSHCSHR LCVACGRIAG 650
    AGKNREKTGS REQRTDDCAQ EAGHAACSLI LTQFVSSQAL AELSTVMHQV 700
    WAKFDIRGHC FCQVDARVWA PGDGGQQKEP TEKTPPAPQL SCNGDSNRTK 750
    DIKEETPDST ESPAEDRAGR SPLPCPSLCE LLASTAVKLC LGHERIHMAF 800
    APVTPALPSD DRITNILDSI IAQVVERKIQ EKALGPGLRA GSGLRKGLSL 850
    PLSPVRTRLS PPGALLWLQE PRPKHGFRLF QEHWRQGQPV LVSGIQKTLR 900
    LSLWGMEALG TLGGQVQTLT ALGPPQPTSL DSTAFWKGFS HPEARPKLDE 950
    GSVLLLHRPL GDKDESRVEN LASSLPLPEY CAHQGKLNLA SYLPLGLTLH 1000
    PLEPQLWAAY GVNSHRGHLG TKNLCVEVSD LISILVHAEA QLPPWYRAQK 1050
    DFLSGLDGEG LWSPGSQTST VWHVFRAQDA QRIRRFLQMV CPAGAGTLEP 1100
    GAPGSCYLDS GLRRRLREEW GVSCWTLLQA PGEAVLVPAG APHQVQGLVS 1150
    TISVTQHFLS PETSALSAQL CHQGASLPPD HRMLYAQMDR AVFQAVKVAV 1200
    GTLQEAK 1207
    Length:1,207
    Mass (Da):130,241
    Last modified:November 16, 2011 - v1
    Checksum:i228AD7EE8C25AFE2
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06083962 Genomic DNA. No translation available.
    CH473951 Genomic DNA. Translation: EDM02230.1.
    RefSeqiXP_006252345.1. XM_006252283.1.
    UniGeneiRn.41543.

    Genome annotation databases

    EnsembliENSRNOT00000015716; ENSRNOP00000015716; ENSRNOG00000011427.
    GeneIDi60563.
    KEGGirno:60563.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06083962 Genomic DNA. No translation available.
    CH473951 Genomic DNA. Translation: EDM02230.1 .
    RefSeqi XP_006252345.1. XM_006252283.1.
    UniGenei Rn.41543.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSRNOT00000015716 ; ENSRNOP00000015716 ; ENSRNOG00000011427 .
    GeneIDi 60563.
    KEGGi rno:60563.

    Organism-specific databases

    CTDi 55806.
    RGDi 620634. Hr.

    Phylogenomic databases

    GeneTreei ENSGT00530000063039.
    OMAi STAVKLC.
    OrthoDBi EOG7PZRWJ.
    TreeFami TF324723.

    Miscellaneous databases

    NextBioi 612242.
    PROi G3V7J4.

    Family and domain databases

    InterProi IPR003347. JmjC_dom.
    [Graphical view ]
    Pfami PF02373. JmjC. 1 hit.
    [Graphical view ]
    SMARTi SM00558. JmjC. 1 hit.
    [Graphical view ]
    PROSITEi PS51184. JMJC. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
      Rat Genome Sequencing Project Consortium
      Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
      , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
      Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Brown NorwayImported.
    2. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BNImported.
    3. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BNImported.
    4. Ensembl
      Submitted (SEP-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Brown NorwayImported.

    Entry informationi

    Entry nameiG3V7J4_RAT
    AccessioniPrimary (citable) accession number: G3V7J4
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 16, 2011
    Last sequence update: November 16, 2011
    Last modified: October 1, 2014
    This is version 17 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3