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G3V7J4 (G3V7J4_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 9. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesSubmitted name:
Hairless homolog (Mouse), isoform CRA_b EMBL EDM02230.1
Submitted name:
Protein hairless Ensembl ENSRNOP00000015716
Gene names
Name:Hr Ensembl ENSRNOP00000015716 RGD 620634
Synonyms:hr EMBL EDM02230.1
ORF Names:rCG_36905 EMBL EDM02230.1
OrganismRattus norvegicus (Rat) [Reference proteome] Ensembl ENSRNOP00000015716
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length1207 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Sequence similarities

Contains 1 JmjC domain. SAAS SAAS003347

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processnegative regulation of transcription, DNA-dependent

Inferred from electronic annotation. Source: Compara

   Cellular_componentnuclear body

Inferred from electronic annotation. Source: Compara

   Molecular_functiontranscription corepressor activity

Inferred from electronic annotation. Source: Compara

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
G3V7J4 [UniParc].

Last modified November 16, 2011. Version 1.
Checksum: 228AD7EE8C25AFE2

FASTA1,207130,241
        10         20         30         40         50         60 
MGLRSSCFVL TLQDPPLGEP HEGRRVMESM PSFLKDTPAW EKTAPVNGIV GQEPGTSPQD 

        70         80         90        100        110        120 
GLHHGALCLG EPVPFWRGVL SAPDSWLPPG FLQGPKDTLS VVEGEGSRNG ERKANWLGSK 

       130        140        150        160        170        180 
EGLRWKEAML AHPLAFCGPA CPPRYGPLIP EHSSGHPKSD PVAFRPLHCP FLLETKILER 

       190        200        210        220        230        240 
APFWVPTCLP PYLMSSLPPE RSYDWPLAPS PWVYSGSQPK VPSAFSLGSK GFYHKDPNIL 

       250        260        270        280        290        300 
RPAKEPLAAS ESGMLGLAPG GHLQQACDAE GPSLHQRDGE TGAGRQQNLC PVFLGYPDTV 

       310        320        330        340        350        360 
PRTPWPSCPP GLVHTLGNVW AGPGSNSFGY QLGPPVTPRC PSPGPPTPPG GCCSSHLPAR 

       370        380        390        400        410        420 
EGDPGPCRKC QDSPEGSSSG PGESSEERNK AGSRASPPSH HTKLKKTWLT RHSEQFECPG 

       430        440        450        460        470        480 
GCPGKGESPA TGLRALKRAG SPEVQGARGP APKRPSHTFP GTGRQGARAW QETPETSTGS 

       490        500        510        520        530        540 
KAEAQQQEEQ RGPRDGRIRL RESRLEDTSC QHHLAGVTQC PSCVQAAGEV EILTSHSQKS 

       550        560        570        580        590        600 
HRLPLEEKPL EEDSCATSEE GGGSSPEASI NKGLAKHLLS GLGDRLCRLL RKEREALAWA 

       610        620        630        640        650        660 
QREGQGPAMT EDSPGIPHCC SRCHHGLFNT HWRCSHCSHR LCVACGRIAG AGKNREKTGS 

       670        680        690        700        710        720 
REQRTDDCAQ EAGHAACSLI LTQFVSSQAL AELSTVMHQV WAKFDIRGHC FCQVDARVWA 

       730        740        750        760        770        780 
PGDGGQQKEP TEKTPPAPQL SCNGDSNRTK DIKEETPDST ESPAEDRAGR SPLPCPSLCE 

       790        800        810        820        830        840 
LLASTAVKLC LGHERIHMAF APVTPALPSD DRITNILDSI IAQVVERKIQ EKALGPGLRA 

       850        860        870        880        890        900 
GSGLRKGLSL PLSPVRTRLS PPGALLWLQE PRPKHGFRLF QEHWRQGQPV LVSGIQKTLR 

       910        920        930        940        950        960 
LSLWGMEALG TLGGQVQTLT ALGPPQPTSL DSTAFWKGFS HPEARPKLDE GSVLLLHRPL 

       970        980        990       1000       1010       1020 
GDKDESRVEN LASSLPLPEY CAHQGKLNLA SYLPLGLTLH PLEPQLWAAY GVNSHRGHLG 

      1030       1040       1050       1060       1070       1080 
TKNLCVEVSD LISILVHAEA QLPPWYRAQK DFLSGLDGEG LWSPGSQTST VWHVFRAQDA 

      1090       1100       1110       1120       1130       1140 
QRIRRFLQMV CPAGAGTLEP GAPGSCYLDS GLRRRLREEW GVSCWTLLQA PGEAVLVPAG 

      1150       1160       1170       1180       1190       1200 
APHQVQGLVS TISVTQHFLS PETSALSAQL CHQGASLPPD HRMLYAQMDR AVFQAVKVAV 


GTLQEAK

« Hide

References

« Hide 'large scale' references
[1]"Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
Rat Genome Sequencing Project Consortium
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. expand/collapse author list , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Brown Norway Ensembl ENSRNOP00000015716.
[2]"Gene and alternative splicing annotation with AIR."
Florea L., Di Francesco V., Miller J., Turner R., Yao A., Harris M., Walenz B., Mobarry C., Merkulov G.V., Charlab R., Dew I., Deng Z., Istrail S., Li P., Sutton G.
Genome Res. 15:54-66(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: BN EMBL EDM02230.1.
[3]Mural R.J., Li P.W., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S.H., Dew I., Evans C.A., Ferriera S., Flanigan M., Fosler C., Glodek A., Gu Z., Holt R.A., Jennings D., Kraft C.L., Lu F. expand/collapse author list , Nguyen T., Nusskern D.R., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Wang Z., Woodage T., Zheng X.H., Zhong F.
Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: BN EMBL EDM02230.1.
[4]Ensembl
Submitted (SEP-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Brown Norway Ensembl ENSRNOP00000015716.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AABR06083962 Genomic DNA. No translation available.
CH473951 Genomic DNA. Translation: EDM02230.1.
RefSeqNP_077340.2. NM_024364.2.
UniGeneRn.41543.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSRNOT00000015716; ENSRNOP00000015716; ENSRNOG00000011427.
GeneID60563.
KEGGrno:60563.

Organism-specific databases

CTD55806.
RGD620634. Hr.

Phylogenomic databases

GeneTreeENSGT00530000063039.
OMALERAPFW.

Family and domain databases

InterProIPR003347. JmjC_dom.
[Graphical view]
PfamPF02373. JmjC. 1 hit.
[Graphical view]
SMARTSM00558. JmjC. 1 hit.
[Graphical view]
PROSITEPS51184. JMJC. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio612242.

Entry information

Entry nameG3V7J4_RAT
AccessionPrimary (citable) accession number: G3V7J4
Entry history
Integrated into UniProtKB/TrEMBL: November 16, 2011
Last sequence update: November 16, 2011
Last modified: April 3, 2013
This is version 9 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info