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G3V7J4

- G3V7J4_RAT

UniProt

G3V7J4 - G3V7J4_RAT

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Protein
Submitted name:

Hairless homolog (Mouse), isoform CRA_b

Gene
Hr, hr, rCG_36905
Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. transcription corepressor activity Source: Ensembl

GO - Biological processi

  1. negative regulation of transcription, DNA-templated Source: Ensembl
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Hairless homolog (Mouse), isoform CRA_bImported
Submitted name:
Lysine-specific demethylase hairlessImported
Gene namesi
Name:HrImported
Synonyms:hrImported
ORF Names:rCG_36905Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 15

Organism-specific databases

RGDi620634. Hr.

Subcellular locationi

GO - Cellular componenti

  1. nuclear body Source: Ensembl
Complete GO annotation...

Family & Domainsi

Sequence similaritiesi

Contains JmjC domain.SAAS annotations

Phylogenomic databases

GeneTreeiENSGT00530000063039.
OMAiSTAVKLC.
OrthoDBiEOG7PZRWJ.
TreeFamiTF324723.

Family and domain databases

InterProiIPR003347. JmjC_dom.
[Graphical view]
PfamiPF02373. JmjC. 1 hit.
[Graphical view]
SMARTiSM00558. JmjC. 1 hit.
[Graphical view]
PROSITEiPS51184. JMJC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G3V7J4-1 [UniParc]FASTAAdd to Basket

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MGLRSSCFVL TLQDPPLGEP HEGRRVMESM PSFLKDTPAW EKTAPVNGIV     50
GQEPGTSPQD GLHHGALCLG EPVPFWRGVL SAPDSWLPPG FLQGPKDTLS 100
VVEGEGSRNG ERKANWLGSK EGLRWKEAML AHPLAFCGPA CPPRYGPLIP 150
EHSSGHPKSD PVAFRPLHCP FLLETKILER APFWVPTCLP PYLMSSLPPE 200
RSYDWPLAPS PWVYSGSQPK VPSAFSLGSK GFYHKDPNIL RPAKEPLAAS 250
ESGMLGLAPG GHLQQACDAE GPSLHQRDGE TGAGRQQNLC PVFLGYPDTV 300
PRTPWPSCPP GLVHTLGNVW AGPGSNSFGY QLGPPVTPRC PSPGPPTPPG 350
GCCSSHLPAR EGDPGPCRKC QDSPEGSSSG PGESSEERNK AGSRASPPSH 400
HTKLKKTWLT RHSEQFECPG GCPGKGESPA TGLRALKRAG SPEVQGARGP 450
APKRPSHTFP GTGRQGARAW QETPETSTGS KAEAQQQEEQ RGPRDGRIRL 500
RESRLEDTSC QHHLAGVTQC PSCVQAAGEV EILTSHSQKS HRLPLEEKPL 550
EEDSCATSEE GGGSSPEASI NKGLAKHLLS GLGDRLCRLL RKEREALAWA 600
QREGQGPAMT EDSPGIPHCC SRCHHGLFNT HWRCSHCSHR LCVACGRIAG 650
AGKNREKTGS REQRTDDCAQ EAGHAACSLI LTQFVSSQAL AELSTVMHQV 700
WAKFDIRGHC FCQVDARVWA PGDGGQQKEP TEKTPPAPQL SCNGDSNRTK 750
DIKEETPDST ESPAEDRAGR SPLPCPSLCE LLASTAVKLC LGHERIHMAF 800
APVTPALPSD DRITNILDSI IAQVVERKIQ EKALGPGLRA GSGLRKGLSL 850
PLSPVRTRLS PPGALLWLQE PRPKHGFRLF QEHWRQGQPV LVSGIQKTLR 900
LSLWGMEALG TLGGQVQTLT ALGPPQPTSL DSTAFWKGFS HPEARPKLDE 950
GSVLLLHRPL GDKDESRVEN LASSLPLPEY CAHQGKLNLA SYLPLGLTLH 1000
PLEPQLWAAY GVNSHRGHLG TKNLCVEVSD LISILVHAEA QLPPWYRAQK 1050
DFLSGLDGEG LWSPGSQTST VWHVFRAQDA QRIRRFLQMV CPAGAGTLEP 1100
GAPGSCYLDS GLRRRLREEW GVSCWTLLQA PGEAVLVPAG APHQVQGLVS 1150
TISVTQHFLS PETSALSAQL CHQGASLPPD HRMLYAQMDR AVFQAVKVAV 1200
GTLQEAK 1207
Length:1,207
Mass (Da):130,241
Last modified:November 16, 2011 - v1
Checksum:i228AD7EE8C25AFE2
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06083962 Genomic DNA. No translation available.
CH473951 Genomic DNA. Translation: EDM02230.1.
RefSeqiXP_006252345.1. XM_006252283.1.
UniGeneiRn.41543.

Genome annotation databases

EnsembliENSRNOT00000015716; ENSRNOP00000015716; ENSRNOG00000011427.
GeneIDi60563.
KEGGirno:60563.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06083962 Genomic DNA. No translation available.
CH473951 Genomic DNA. Translation: EDM02230.1 .
RefSeqi XP_006252345.1. XM_006252283.1.
UniGenei Rn.41543.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSRNOT00000015716 ; ENSRNOP00000015716 ; ENSRNOG00000011427 .
GeneIDi 60563.
KEGGi rno:60563.

Organism-specific databases

CTDi 55806.
RGDi 620634. Hr.

Phylogenomic databases

GeneTreei ENSGT00530000063039.
OMAi STAVKLC.
OrthoDBi EOG7PZRWJ.
TreeFami TF324723.

Miscellaneous databases

NextBioi 612242.
PROi G3V7J4.

Family and domain databases

InterProi IPR003347. JmjC_dom.
[Graphical view ]
Pfami PF02373. JmjC. 1 hit.
[Graphical view ]
SMARTi SM00558. JmjC. 1 hit.
[Graphical view ]
PROSITEi PS51184. JMJC. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  4. Ensembl
    Submitted (SEP-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiG3V7J4_RAT
AccessioniPrimary (citable) accession number: G3V7J4
Entry historyi
Integrated into UniProtKB/TrEMBL: November 16, 2011
Last sequence update: November 16, 2011
Last modified: July 9, 2014
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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