G3V6H1 (G3V6H1_RAT) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Galactosylceramidase EMBL AAR26418.1

Submitted name:
Protein Galc Ensembl ENSRNOP00000005015

Gene names

Name:

Galc Ensembl ENSRNOP00000005015 RGD 1359384

Organism

Rattus norvegicus (Rat) [Reference proteome] Ensembl ENSRNOP00000005015

Taxonomic identifier

10116 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length	668 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro galactosylceramide catabolic process Inferred from electronic annotation. Source: InterPro
Cellular_component	mitochondrion Inferred from electronic annotation. Source: Compara
Molecular_function	galactosylceramidase activity Inferred from electronic annotation. Source: Compara
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	G3V6H1 [UniParc]. Last modified April 3, 2013. Version 2. Checksum: 7033207C1A2A1A4E	FASTA	668	75,276
	10 20 30 40 50 60 MTAAAGSASR VAVPLLLCAM LAPSGAYELD DSDGLGLEFD GIGAVSGGGA TSRLLVNYPE 70 80 90 100 110 120 PYRSEILDYL FKPNFGASLH ILKVEIGGDG QTTDGTEPSH MHYELDENYF RGYEWWLMKE 130 140 150 160 170 180 AKKRNPNIIL MGLPWSFPGW LGKGFSWPYV NLQLTAFYIV RWILGAKHYH DLDIDYIGIW 190 200 210 220 230 240 NERPFDANYI KELRKMLDYE GLQRVRIIAS DNLWEPISSS VLLDQELWKV VDVIGAHYPG 250 260 270 280 290 300 TYTVWNAKMS GKKLWSSEDF STVNSNVGAG CWGRILNQNY INGNMTATIA WNLVASYYEE 310 320 330 340 350 360 LPYGRSGLMT AQEPWSGHYV VASPIWVSAH TTQFTQPGWY YLKTVGHLEK GGSYVALTDG 370 380 390 400 410 420 LGNFTIIVET MSRQHSMCIR PYLPYYNVSR QLATFILKGS LKEIQELQVW YTKLGTTPEK 430 440 450 460 470 480 LHFKQLETLW LLDGSGSFSL ELEEDEMFTL TTLTTGHKGS YRPPPKSQPF PTSYKDDFNV 490 500 510 520 530 540 EYPLFSEAPN FADQTGVFEY YTNNEDLEHR FTLRQVLNQR PITWAADASS TISVIGDHHW 550 560 570 580 590 600 SNMTVQCDVY IETPRTGGVF IAGRVNKGGI LIRTASGVFF WIFANGSYRV TADLGGWITY 610 620 630 640 650 660 ASGHADVTAK RWYTLTLGIK GYLASGMLNG KILWENVPVK YPGHGWAAIG THTFEFAQFD NFHVEAAR

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	Karasawa T., Koike H., Han G.D., Miyauchi N., Harita Y., Suzuki K., Shimizu F., Kawachi H. Submitted (SEP-2003) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: Wistar EMBL AAR26418.1.
[2]	"Genome sequence of the Brown Norway rat yields insights into mammalian evolution." Rat Genome Sequencing Project Consortium Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S. Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Brown Norway Ensembl ENSRNOP00000005015.
[3]	Ensembl Submitted (SEP-2011) to UniProtKB Cited for: IDENTIFICATION. Strain: Brown Norway Ensembl ENSRNOP00000005015.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AABR06045814 Genomic DNA. No translation available. AY386370 mRNA. Translation: AAR26418.1.
IPI	IPI00367718.
RefSeq	NP_001005888.1. NM_001005888.1.
UniGene	Rn.30608.
3D structure databases
ModBase	Search...
Protein family/group databases
CAZy	GH59. Glycoside Hydrolase Family 59.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSRNOT00000005015; ENSRNOP00000005015; ENSRNOG00000003759.
GeneID	314360.
KEGG	rno:314360.
UCSC	RGD:1359384. rat.
Organism-specific databases
CTD	2581.
RGD	1359384. Galc.
Phylogenomic databases
eggNOG	NOG76999.
GeneTree	ENSGT00390000003303.
HOGENOM	HOG000068033.
HOVERGEN	HBG005800.
KO	K01202.
OMA	FNIRNPP.
OrthoDB	EOG4XSKPG.
Gene expression databases
Genevestigator	Q5YKG1.
Family and domain databases
Gene3D	3.20.20.80. 1 hit.
InterPro	IPR001286. Glyco_hydro_59. IPR013781. Glyco_hydro_catalytic_dom. IPR017853. Glycoside_hydrolase_SF. [Graphical view]
PANTHER	PTHR15172. PTHR15172. 1 hit.
Pfam	PF02057. Glyco_hydro_59. 1 hit. [Graphical view]
PRINTS	PR00850. GLHYDRLASE59.
SUPFAM	SSF51445. Glyco_hydro_cat. 1 hit.
ProtoNet	Search...
Other
NextBio	35583728.

Entry information

Entry name

G3V6H1_RAT

Accession

Primary (citable) accession number: G3V6H1
Secondary accession number(s): Q5YKG1

Entry history

Integrated into UniProtKB/TrEMBL:	November 16, 2011
Last sequence update:	April 3, 2013
Last modified:	May 1, 2013
This is version 15 of the entry and version 2 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)