Skip Header

Contribute Send feedback
Read comments (?) or add your own

G2Z908 (G2Z908_LISIP) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 13. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
RNA polymerase sigma factor RuleBase RU000715
Gene names
Name:rpoD EMBL CBW85892.1
Ordered Locus Names:LIV_1411 EMBL CBW85892.1
OrganismListeria ivanovii (strain ATCC BAA-678 / PAM 55) [Complete proteome] [HAMAP] EMBL CBW85892.1
Taxonomic identifier881621 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Bacilli › Bacillales › Listeriaceae › Listeria ›

Protein attributes

Sequence length374 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released By similarity. RuleBase RU000715

Sequence similarities

Belongs to the sigma-70 factor family. RuleBase RU000715

Sequences

Sequence LengthMass (Da)Tools
G2Z908 [UniParc].

Last modified November 16, 2011. Version 1.
Checksum: 1591D2A6BF91A2C3

FASTA37442,446
        10         20         30         40         50         60 
MSDKTQNTKP VAELNVEQVK EALIEEGKKK GILTYAKIAA RLAPFTLDSD QMDEYLEHVG 

        70         80         90        100        110        120 
EAGIEVSDDA DDEDPDETEL VKEETESFDL TDMSVPPGVK INDPVRMYLK EIGRVDLLTA 

       130        140        150        160        170        180 
DEEIALAKRI EAGDIEAKGR LAEANLRLVV SIAKRYVGRG MLFLDLIQEG NMGLMKAVEK 

       190        200        210        220        230        240 
FDFNKGFKFS TYATWWIRQA ITRAIADQAR TIRIPVHMVE TINKLIRVQR SLLQDLGRDP 

       250        260        270        280        290        300 
SPEEIGEEMD LPTEKVREIL KIAQEPVSLE TPIGEEDDSH LGDFIEDQDA TSPSDHAAYE 

       310        320        330        340        350        360 
LLKEQLEDVL DTLTDREENV LRLRFGLDDG RTRTLEEVGR VFGVTRERIR QIEAKALRKL 

       370 
RHPSRSKQLK DFLE

« Hide

References

[1]"Complete genome sequence of the animal pathogen Listeria ivanovii, which provides insights into host specificities and evolution of the genus Listeria."
Buchrieser C., Rusniok C., Garrido P., Hain T., Scortti M., Lampidis R., Karst U., Chakraborty T., Cossart P., Kreft J., Vazquez-Boland J.A., Goebel W., Glaser P.
J. Bacteriol. 193:6787-6788(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC BAA-678 / PAM 55.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		FR687253 Genomic DNA. Translation: CBW85892.1.
RefSeqYP_004855168.1. NC_016011.1.

3D structure databases

ProteinModelPortalG2Z908.
SMRG2Z908. Positions 103-374.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCBW85892; CBW85892; LIV_1411.
GeneID11162134.
KEGGliv:LIV_1411.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK03086.

Family and domain databases

Gene3D1.10.10.10. 2 hits.
InterProIPR014284. RNA_pol_sigma-70_dom.
IPR000943. RNA_pol_sigma70.
IPR009042. RNA_pol_sigma70_r1_2.
IPR007627. RNA_pol_sigma70_r2.
IPR007624. RNA_pol_sigma70_r3.
IPR007630. RNA_pol_sigma70_r4.
IPR007127. RNA_pol_sigma_70_r1_1.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR012760. RNA_pol_sigma_RpoD_C.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamPF03979. Sigma70_r1_1. 1 hit.
PF00140. Sigma70_r1_2. 1 hit.
PF04542. Sigma70_r2. 1 hit.
PF04539. Sigma70_r3. 1 hit.
PF04545. Sigma70_r4. 1 hit.
[Graphical view]
PRINTSPR00046. SIGMA70FCT.
SUPFAMSSF88946. Sigma_r2. 1 hit.
SSF88659. Sigma_r3_r4. 2 hits.
TIGRFAMsTIGR02393. RpoD_Cterm. 1 hit.
TIGR02937. sigma70-ECF. 1 hit.
PROSITEPS00715. SIGMA70_1. 1 hit.
PS00716. SIGMA70_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameG2Z908_LISIP
AccessionPrimary (citable) accession number: G2Z908
Entry history
Integrated into UniProtKB/TrEMBL: November 16, 2011
Last sequence update: November 16, 2011
Last modified: May 1, 2013
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info