G2TMD9 (G2TMD9_BACCO) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA ligase D EMBL AEP02437.1

Gene names

ORF Names:

Bcoa_3265 EMBL AEP02437.1

Organism

Bacillus coagulans 36D1 EMBL AEP02437.1

Taxonomic identifier

345219 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Firmicutes › Bacilli › Bacillales › Bacillaceae › Bacillus › Bacillus coagulans

Protein attributes

Sequence length	613 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL AEP02437.1
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	G2TMD9 [UniParc]. Last modified November 16, 2011. Version 1. Checksum: 544A3BA7BCBA351D	FASTA	613	70,594
	10 20 30 40 50 60 MKPMLPVLKW SLPDTGKWVY EIKYDGYRAI LDWTEDGMRL WSRNGKDLLP RFPEIRTFLQ 70 80 90 100 110 120 TLEGRVKGQL PLRLDGELVL LENPYKAGFR ELQRRGRMKA EAAAEQAKMR PAHYLVFDLL 130 140 150 160 170 180 MLGGEDMAGK PYLQRKKALE NLCETLALPL SPAPGETARV QQIPFTRDAS VLKETVKNFN 190 200 210 220 230 240 SEGIVAKQTD SKWEAGKRVE TWIKVKNWKT AACFITAYDE KNGYFDVAVF KDGGIFPIGQ 250 260 270 280 290 300 FLFSMNPDEK QILTEAVRKN AANNENGVYT IDPSICVEIF YLEWDGANLR EPHFHRFRFD 310 320 330 340 350 360 LSPDACTFED FRLRNAAIPE EVEVTHPDKP LWKKRHVTKL DFLAYMREIS PFMLPFLSDR 370 380 390 400 410 420 LLTVIRYPHG VFGEAFYQKN CPDYAPAFVD TAMHEDIRYI VCNDLKTLMW LANQLAVEYH 430 440 450 460 470 480 IPFQTVNSRF VSEIVFDFDP PSRDAFQLAV EAALLLKQVT DALHLESFVK ISGNKGLQVY 490 500 510 520 530 540 IPLPDRQFSW EDTRLFTEFM AAYFISKSPE HFTIERMKKK RGGKLYVDFV QHAEGKTIIA 550 560 570 580 590 600 PYSMRGHEDA LVAAPLFWEE VNASLSPYDF TIETVLSRVN RYGCPFARFF ACKSGQPFAP 610 VLAFLKQNKG RPI

References

[1]

"Complete Genome Sequence of a thermotolerant sporogenic lactic acid bacterium, Bacillus coagulans strain 36D1." Rhee M.S., Moritz B.E., Xie G., Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Chertkov O., Brettin T., Han C., Detter C., Pitluck S., Richardson P. , Land M.L., Patel M., Ou M., Harbrucker R., Ingram L.O., Shanmugam K.T. Submitted (APR-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: 36D1 EMBL AEP02437.1.

[2]

Shanmugan K.T. Submitted (SEP-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: 36D1 EMBL AEP02437.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP003056 Genomic DNA. Translation: AEP02437.1.
RefSeq	YP_004861217.1. NC_016023.1.
3D structure databases
ProteinModelPortal	G2TMD9.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEP02437; AEP02437; Bcoa_3265.
GeneID	11174191.
KEGG	bag:Bcoa_3265.
Phylogenomic databases
KO	K01971.
Enzyme and pathway databases
BioCyc	BCOA345219:GH5A-3227-MONOMER.
Family and domain databases
InterPro	IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR014146. DNA_pol_LigD_ligase_dom. IPR014145. LigD_pol. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
TIGRFAMs	TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS00333. DNA_LIGASE_A2. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

G2TMD9_BACCO

Accession

Primary (citable) accession number: G2TMD9

Entry history

Integrated into UniProtKB/TrEMBL:	November 16, 2011
Last sequence update:	November 16, 2011
Last modified:	April 3, 2013
This is version 9 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)