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G2TMD9

- G2TMD9_BACCO

UniProt

G2TMD9 - G2TMD9_BACCO

Protein
Submitted name:

DNA ligase D

Gene

Bcoa_3265

Organism
Bacillus coagulans 36D1
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 13 (01 Oct 2014)
      Sequence version 1 (16 Nov 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciBCOA345219:GH5A-3227-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase DImported
    Gene namesi
    ORF Names:Bcoa_3265Imported
    OrganismiBacillus coagulans 36D1Imported
    Taxonomic identifieri345219 [NCBI]
    Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
    ProteomesiUP000009283: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliG2TMD9.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    InterProiIPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014145. LigD_pol.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    G2TMD9-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKPMLPVLKW SLPDTGKWVY EIKYDGYRAI LDWTEDGMRL WSRNGKDLLP    50
    RFPEIRTFLQ TLEGRVKGQL PLRLDGELVL LENPYKAGFR ELQRRGRMKA 100
    EAAAEQAKMR PAHYLVFDLL MLGGEDMAGK PYLQRKKALE NLCETLALPL 150
    SPAPGETARV QQIPFTRDAS VLKETVKNFN SEGIVAKQTD SKWEAGKRVE 200
    TWIKVKNWKT AACFITAYDE KNGYFDVAVF KDGGIFPIGQ FLFSMNPDEK 250
    QILTEAVRKN AANNENGVYT IDPSICVEIF YLEWDGANLR EPHFHRFRFD 300
    LSPDACTFED FRLRNAAIPE EVEVTHPDKP LWKKRHVTKL DFLAYMREIS 350
    PFMLPFLSDR LLTVIRYPHG VFGEAFYQKN CPDYAPAFVD TAMHEDIRYI 400
    VCNDLKTLMW LANQLAVEYH IPFQTVNSRF VSEIVFDFDP PSRDAFQLAV 450
    EAALLLKQVT DALHLESFVK ISGNKGLQVY IPLPDRQFSW EDTRLFTEFM 500
    AAYFISKSPE HFTIERMKKK RGGKLYVDFV QHAEGKTIIA PYSMRGHEDA 550
    LVAAPLFWEE VNASLSPYDF TIETVLSRVN RYGCPFARFF ACKSGQPFAP 600
    VLAFLKQNKG RPI 613
    Length:613
    Mass (Da):70,594
    Last modified:November 16, 2011 - v1
    Checksum:i544A3BA7BCBA351D
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003056 Genomic DNA. Translation: AEP02437.1.
    RefSeqiWP_014098446.1. NC_016023.1.
    YP_004861217.1. NC_016023.1.

    Genome annotation databases

    EnsemblBacteriaiAEP02437; AEP02437; Bcoa_3265.
    GeneIDi11174191.
    KEGGibag:Bcoa_3265.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003056 Genomic DNA. Translation: AEP02437.1 .
    RefSeqi WP_014098446.1. NC_016023.1.
    YP_004861217.1. NC_016023.1.

    3D structure databases

    ProteinModelPortali G2TMD9.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEP02437 ; AEP02437 ; Bcoa_3265 .
    GeneIDi 11174191.
    KEGGi bag:Bcoa_3265.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci BCOA345219:GH5A-3227-MONOMER.

    Family and domain databases

    InterProi IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014145. LigD_pol.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 36D1Imported.

    Entry informationi

    Entry nameiG2TMD9_BACCO
    AccessioniPrimary (citable) accession number: G2TMD9
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 16, 2011
    Last sequence update: November 16, 2011
    Last modified: October 1, 2014
    This is version 13 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3