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G2TMD9 (G2TMD9_BACCO) Unreviewed, UniProtKB/TrEMBL

Last modified January 22, 2014. Version 11. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
ORF Names:Bcoa_3265 EMBL AEP02437.1
OrganismBacillus coagulans 36D1 [Complete proteome] EMBL AEP02437.1
Taxonomic identifier345219 [NCBI]
Taxonomic lineageBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus

Protein attributes

Sequence length613 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
G2TMD9 [UniParc].

Last modified November 16, 2011. Version 1.
Checksum: 544A3BA7BCBA351D

FASTA61370,594
        10         20         30         40         50         60 
MKPMLPVLKW SLPDTGKWVY EIKYDGYRAI LDWTEDGMRL WSRNGKDLLP RFPEIRTFLQ 

        70         80         90        100        110        120 
TLEGRVKGQL PLRLDGELVL LENPYKAGFR ELQRRGRMKA EAAAEQAKMR PAHYLVFDLL 

       130        140        150        160        170        180 
MLGGEDMAGK PYLQRKKALE NLCETLALPL SPAPGETARV QQIPFTRDAS VLKETVKNFN 

       190        200        210        220        230        240 
SEGIVAKQTD SKWEAGKRVE TWIKVKNWKT AACFITAYDE KNGYFDVAVF KDGGIFPIGQ 

       250        260        270        280        290        300 
FLFSMNPDEK QILTEAVRKN AANNENGVYT IDPSICVEIF YLEWDGANLR EPHFHRFRFD 

       310        320        330        340        350        360 
LSPDACTFED FRLRNAAIPE EVEVTHPDKP LWKKRHVTKL DFLAYMREIS PFMLPFLSDR 

       370        380        390        400        410        420 
LLTVIRYPHG VFGEAFYQKN CPDYAPAFVD TAMHEDIRYI VCNDLKTLMW LANQLAVEYH 

       430        440        450        460        470        480 
IPFQTVNSRF VSEIVFDFDP PSRDAFQLAV EAALLLKQVT DALHLESFVK ISGNKGLQVY 

       490        500        510        520        530        540 
IPLPDRQFSW EDTRLFTEFM AAYFISKSPE HFTIERMKKK RGGKLYVDFV QHAEGKTIIA 

       550        560        570        580        590        600 
PYSMRGHEDA LVAAPLFWEE VNASLSPYDF TIETVLSRVN RYGCPFARFF ACKSGQPFAP 

       610 
VLAFLKQNKG RPI 

« Hide

References

[1]US DOE Joint Genome Institute (JGI-PGF)
Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Chertkov O., Brettin T., Han C., Detter C., Pitluck S., Shanmugam K.T.
Submitted (APR-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: 36D1 EMBL AEP02437.1.
[2]"Complete Genome Sequence of a thermotolerant sporogenic lactic acid bacterium, Bacillus coagulans strain 36D1."
Rhee M.S., Moritz B.E., Xie G., Glavina Del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Chertkov O., Brettin T., Han C., Detter C., Pitluck S., Land M.L., Patel M., Ou M., Harbrucker R., Ingram L.O., Shanmugam K.T.
Stand. Genomic Sci. 5:331-340(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: 36D1 EMBL AEP02437.1.
[3]Shanmugan K.T.
Submitted (SEP-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: 36D1 EMBL AEP02437.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP003056 Genomic DNA. Translation: AEP02437.1.
RefSeqYP_004861217.1. NC_016023.1.

3D structure databases

ProteinModelPortalG2TMD9.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEP02437; AEP02437; Bcoa_3265.
GeneID11174191.
KEGGbag:Bcoa_3265.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycBCOA345219:GH5A-3227-MONOMER.

Family and domain databases

InterProIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014145. LigD_pol.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
TIGRFAMsTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameG2TMD9_BACCO
AccessionPrimary (citable) accession number: G2TMD9
Entry history
Integrated into UniProtKB/TrEMBL: November 16, 2011
Last sequence update: November 16, 2011
Last modified: January 22, 2014
This is version 11 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)