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Protein
Submitted name:

DNA ligase D

Gene

Bcoa_3265

Organism
Bacillus coagulans 36D1
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBCOA345219:GH5A-3227-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
ORF Names:Bcoa_3265Imported
OrganismiBacillus coagulans 36D1Imported
Taxonomic identifieri345219 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
ProteomesiUP000009283 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi345219.Bcoa_3265.

Structurei

3D structure databases

ProteinModelPortaliG2TMD9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. LigD_ligase_dom.
IPR014145. LigD_pol_dom.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G2TMD9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKPMLPVLKW SLPDTGKWVY EIKYDGYRAI LDWTEDGMRL WSRNGKDLLP
60 70 80 90 100
RFPEIRTFLQ TLEGRVKGQL PLRLDGELVL LENPYKAGFR ELQRRGRMKA
110 120 130 140 150
EAAAEQAKMR PAHYLVFDLL MLGGEDMAGK PYLQRKKALE NLCETLALPL
160 170 180 190 200
SPAPGETARV QQIPFTRDAS VLKETVKNFN SEGIVAKQTD SKWEAGKRVE
210 220 230 240 250
TWIKVKNWKT AACFITAYDE KNGYFDVAVF KDGGIFPIGQ FLFSMNPDEK
260 270 280 290 300
QILTEAVRKN AANNENGVYT IDPSICVEIF YLEWDGANLR EPHFHRFRFD
310 320 330 340 350
LSPDACTFED FRLRNAAIPE EVEVTHPDKP LWKKRHVTKL DFLAYMREIS
360 370 380 390 400
PFMLPFLSDR LLTVIRYPHG VFGEAFYQKN CPDYAPAFVD TAMHEDIRYI
410 420 430 440 450
VCNDLKTLMW LANQLAVEYH IPFQTVNSRF VSEIVFDFDP PSRDAFQLAV
460 470 480 490 500
EAALLLKQVT DALHLESFVK ISGNKGLQVY IPLPDRQFSW EDTRLFTEFM
510 520 530 540 550
AAYFISKSPE HFTIERMKKK RGGKLYVDFV QHAEGKTIIA PYSMRGHEDA
560 570 580 590 600
LVAAPLFWEE VNASLSPYDF TIETVLSRVN RYGCPFARFF ACKSGQPFAP
610
VLAFLKQNKG RPI
Length:613
Mass (Da):70,594
Last modified:November 16, 2011 - v1
Checksum:i544A3BA7BCBA351D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003056 Genomic DNA. Translation: AEP02437.1.
RefSeqiWP_014098446.1. NC_016023.1.
YP_004861217.1. NC_016023.1.

Genome annotation databases

EnsemblBacteriaiAEP02437; AEP02437; Bcoa_3265.
GeneIDi11174191.
KEGGibag:Bcoa_3265.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003056 Genomic DNA. Translation: AEP02437.1.
RefSeqiWP_014098446.1. NC_016023.1.
YP_004861217.1. NC_016023.1.

3D structure databases

ProteinModelPortaliG2TMD9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi345219.Bcoa_3265.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEP02437; AEP02437; Bcoa_3265.
GeneIDi11174191.
KEGGibag:Bcoa_3265.

Phylogenomic databases

KOiK01971.

Enzyme and pathway databases

BioCyciBCOA345219:GH5A-3227-MONOMER.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. LigD_ligase_dom.
IPR014145. LigD_pol_dom.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 36D1Imported.

Entry informationi

Entry nameiG2TMD9_BACCO
AccessioniPrimary (citable) accession number: G2TMD9
Entry historyi
Integrated into UniProtKB/TrEMBL: November 16, 2011
Last sequence update: November 16, 2011
Last modified: June 24, 2015
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.