G2THR5 (G2THR5_BACCO) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Probable DNA-directed RNA polymerase subunit delta HAMAP-Rule MF_00357

Alternative name(s):
RNAP delta factor HAMAP-Rule MF_00357

Gene names

Name:	rpoE HAMAP-Rule MF_00357
ORF Names:	Bcoa_1427 EMBL AEP00633.1

Organism

Bacillus coagulans 36D1 EMBL AEP00633.1

Taxonomic identifier

345219 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Firmicutes › Bacilli › Bacillales › Bacillaceae › Bacillus › Bacillus coagulans

Protein attributes

Sequence length	194 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling By similarity. SAAS SAAS007759 HAMAP-Rule MF_00357
Subunit structure	RNAP is composed of a core of 2 alpha, a beta and a beta' subunits. The core is associated with a delta subunit and one of several sigma factors By similarity. SAAS SAAS007759 HAMAP-Rule MF_00357
Sequence similarities	Belongs to the RpoE family. HAMAP-Rule MF_00357

Ontologies

Keywords
Biological process	Transcription
Cellular component	DNA-directed RNA polymerase SAAS SAAS007759 HAMAP-Rule MF_00357 EMBL AEP00633.1
Molecular function	Nucleotidyltransferase SAAS SAAS007759 HAMAP-Rule MF_00357 Transferase
Gene Ontology (GO)
Biological_process	regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: HAMAP transcription, DNA-dependent Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: InterPro DNA-directed RNA polymerase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Regions
	Compositional bias	116 – 194	79	Asp/Glu-rich (acidic) HAMAP-Rule MF_00357

Sequences

	Sequence		Length	Mass (Da)
	G2THR5 [UniParc]. Last modified November 16, 2011. Version 1. Checksum: B14B91C98EDDEF11	FASTA	194	22,660
	10 20 30 40 50 60 MSLRQLPKEE LKEMSFIELA EQILEEKKQV TSFQDLLAEI GAVLGLPEEE TERKMIQFYT 70 80 90 100 110 120 DLNIDGRFIS LGDNTWGLRA WYPVDQIDEE VTHTVKTKTK RKKAKVVEEE EDIIDDEDLD 130 140 150 160 170 180 LEDIDDVVED DDEDFADEDE EDEDLAEDED LADDEFSDID EDEDDDETFE DDELLTDDFD 190 ITEDEEEEDA NDKD

References

[1]

"Complete Genome Sequence of a thermotolerant sporogenic lactic acid bacterium, Bacillus coagulans strain 36D1." Rhee M.S., Moritz B.E., Xie G., Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Chertkov O., Brettin T., Han C., Detter C., Pitluck S., Richardson P. , Land M.L., Patel M., Ou M., Harbrucker R., Ingram L.O., Shanmugam K.T. Submitted (APR-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: 36D1 EMBL AEP00633.1.

[2]

Shanmugan K.T. Submitted (SEP-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: 36D1 EMBL AEP00633.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP003056 Genomic DNA. Translation: AEP00633.1.
RefSeq	YP_004859413.1. NC_016023.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEP00633; AEP00633; Bcoa_1427.
GeneID	11171720.
KEGG	bag:Bcoa_1427.
Phylogenomic databases
KO	K03048.
Enzyme and pathway databases
BioCyc	BCOA345219:GH5A-1412-MONOMER.
Family and domain databases
HAMAP	MF_00357. RNApol_bact_RpoE.
InterPro	IPR007759. DNA-dir_RNA_pol_delta. [Graphical view]
Pfam	PF05066. RNA_pol_delta. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

G2THR5_BACCO

Accession

Primary (citable) accession number: G2THR5

Entry history

Integrated into UniProtKB/TrEMBL:	November 16, 2011
Last sequence update:	November 16, 2011
Last modified:	April 3, 2013
This is version 11 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)