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G2SFD0 (G2SFD0_RHOMR) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 12. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Elongation factor Tu HAMAP-Rule MF_00118
Short name=EF-Tu HAMAP-Rule MF_00118
Gene names
Name:tuf HAMAP-Rule MF_00118
ORF Names:Rhom172_2042 EMBL AEN73945.1
OrganismRhodothermus marinus SG0.5JP17-172 EMBL AEN73945.1
Taxonomic identifier762570 [NCBI]
Taxonomic lineageBacteria › Bacteroidetes › Bacteroidetes Order II. Incertae sedis › Rhodothermaceae › Rhodothermus ›

Protein attributes

Sequence length398 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis By similarity. RuleBase RU000325 HAMAP-Rule MF_00118

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00118

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00118.

Sequence similarities

Belongs to the GTP-binding elongation factor family. EF-Tu/EF-1A subfamily. RuleBase RU000325 HAMAP-Rule MF_00118

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding19 – 268GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding84 – 885GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding139 – 1424GTP By similarity HAMAP-Rule MF_00118

Sequences

Sequence LengthMass (Da)Tools
G2SFD0 [UniParc].

Last modified November 16, 2011. Version 1.
Checksum: EAF11E825A12C6FB

FASTA39844,065
        10         20         30         40         50         60 
MAKEVFQRTK PHVNIGTIGH VDHGKTTLTA AITQVLAKRV PDPVNKPYTF DSIDNAPEER 

        70         80         90        100        110        120 
ERGITIATAH VEYATEKRHY AHVDCPGHAD YVKNMITGAA QMDGAILVVA ATDGPMPQTR 

       130        140        150        160        170        180 
EHILLARQVG VPYIVVFLNK VDLVDDEELL ELVEMEVREL LSQYEFPGDE VPVIRGSALG 

       190        200        210        220        230        240 
ALNGDPQWED KIMELMNAVD EYIPTPVREK DKPFLMPIED VFSITGRGTV VTGRIERGVV 

       250        260        270        280        290        300 
KVGDPVEIIG LREEKLTSVV TGVEMFRKQL EQGEAGDNVG LLLRGIGKED VERGMVVCAP 

       310        320        330        340        350        360 
GSVTPHREFE CEVYVLSKEE GGRHTPFFNG YRPQFYFRTT DVTGDITLPE GVEMVMPGDN 

       370        380        390 
ARFRVKLIYP VAMEEGLRFA IREGGRTVGA GVVTKILD

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References

[1]"Complete sequence of chromosome of Rhodothermus marinus SG0.5JP17-172."
US DOE Joint Genome Institute
Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Ovchinnikova G., Chertkov O., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Gladden J., Woyke T.
Submitted (AUG-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: SG0.5JP17-172 EMBL AEN73945.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP003029 Genomic DNA. Translation: AEN73945.1.
RefSeqYP_004825782.1. NC_015966.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEN73945; AEN73945; Rhom172_2042.
GeneID11113936.
KEGGrmg:Rhom172_2042.

Phylogenomic databases

KOK02358.

Enzyme and pathway databases

BioCycRMAR762570:GJAN-2084-MONOMER.

Family and domain databases

HAMAPMF_00118_B. EF_Tu_B.
InterProIPR000795. EF_GTP-bd_dom.
IPR005225. Small_GTP-bd_dom.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
IPR009000. Transl_elong_init/rib_B-barrel.
[Graphical view]
PfamPF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view]
PRINTSPR00315. ELONGATNFCT.
SUPFAMSSF50465. Elong_init_C. 1 hit.
SSF50447. Translat_factor. 1 hit.
TIGRFAMsTIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.
PROSITEPS00301. EFACTOR_GTP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameG2SFD0_RHOMR
AccessionPrimary (citable) accession number: G2SFD0
Entry history
Integrated into UniProtKB/TrEMBL: November 16, 2011
Last sequence update: November 16, 2011
Last modified: April 3, 2013
This is version 12 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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