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Protein
Submitted name:

DNA polymerase LigD, polymerase domain protein

Gene

Strvi_3580

Organism
Streptomyces violaceusniger Tu 4113
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. DNA primase activity Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciSVIO653045:GHK6-3374-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, polymerase domain proteinImported
Gene namesi
ORF Names:Strvi_3580Imported
OrganismiStreptomyces violaceusniger Tu 4113Imported
Taxonomic identifieri653045 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesStreptomycineaeStreptomycetaceaeStreptomyces
ProteomesiUP000008703: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

InterProiIPR002755. DNA_primase_S.
IPR014145. LigD_pol.
[Graphical view]
PfamiPF01896. DNA_primase_S. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.

Sequencei

Sequence statusi: Complete.

G2PEB7-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAESVELTVG GRTVRVTNPG KVYFPERGFT KLDLARYYLA VGEGALRALR
60 70 80 90 100
DRPTTLERYP DGVDGESFFQ KRAPKNLPEW IPTGRISFPS GRHADEICPT
110 120 130 140 150
ETAAVVWAAN LGSLTFHPWP VRREDTEHPD ELRIDLDPQP GTDYEDAVRA
160 170 180 190 200
AEELREVLDG LGLRGWPKTS GGRGLHVFVP IAPEWTFTQV RRSAIAIARE
210 220 230 240 250
LERRAPERVT TKWWKEERGR KIFVDYNQTA RDRTIASAYS VRPRPHAPVS
260 270 280 290 300
APLRWAEVPD ARPRDFDLAT MPVRYRELGD VHADMDEHAF RLESALELAT
310 320 330
RDEQEHGLGD LPYPPEHPKA AGEPKRVQPS RAKK
Length:334
Mass (Da):37,864
Last modified:November 16, 2011 - v1
Checksum:iF985ADCA632987FF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002994 Genomic DNA. Translation: AEM83248.1.
RefSeqiYP_004813528.1. NC_015957.1.

Genome annotation databases

EnsemblBacteriaiAEM83248; AEM83248; Strvi_3580.
GeneIDi11086323.
KEGGisvl:Strvi_3580.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002994 Genomic DNA. Translation: AEM83248.1.
RefSeqiYP_004813528.1. NC_015957.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEM83248; AEM83248; Strvi_3580.
GeneIDi11086323.
KEGGisvl:Strvi_3580.

Phylogenomic databases

KOiK01971.

Enzyme and pathway databases

BioCyciSVIO653045:GHK6-3374-MONOMER.

Family and domain databases

InterProiIPR002755. DNA_primase_S.
IPR014145. LigD_pol.
[Graphical view]
PfamiPF01896. DNA_primase_S. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of chromosome of Streptomyces violaceusniger Tu 4113."
    US DOE Joint Genome Institute
    Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Ivanova N., Daligault H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Hagen A.
    , Katz L., Fiedler H.-P., Keasling J., Fortman J., Woyke T.
    Submitted (AUG-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: Tu 4113Imported.

Entry informationi

Entry nameiG2PEB7_STRVO
AccessioniPrimary (citable) accession number: G2PEB7
Entry historyi
Integrated into UniProtKB/TrEMBL: November 16, 2011
Last sequence update: November 16, 2011
Last modified: January 7, 2015
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.