Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

DNA polymerase LigD, ligase domain protein

Gene

Thewi_2144

Organism
Thermoanaerobacter wiegelii Rt8.B1
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciTWIE697303:GH3A-2195-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, ligase domain proteinImported
Gene namesi
ORF Names:Thewi_2144Imported
OrganismiThermoanaerobacter wiegelii Rt8.B1Imported
Taxonomic identifieri697303 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaThermoanaerobacteralesThermoanaerobacteraceaeThermoanaerobacter
ProteomesiUP000008276 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi697303.Thewi_2144.

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G2MTV9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSMIEEKISP MLASSSDPFD SPEWIYEIKW DGSRTIAFLS SKTRLQDRRL
60 70 80 90 100
VDITYKFPDL ALLHKQIKAK EAILDGELVV LKNGKPSYKS IMSRKHQQNL
110 120 130 140 150
LKINLLSKIM PVIFITWDIL YLNGKPLVEL PLIERKDILR KTVKENEIIK
160 170 180 190 200
ISDFIFEHGK MLFEETGKKG LEGIVAKKAD SKYLIGKRSK LWLKSKHFIV
210 220 230 240 250
INAVIIGYRT DKTALILGLY DEENNLINIG SCESGLSQKE LKAFYEVAKE
260 270 280 290 300
IKAPDNYYNF KEKNVQWLKP LLTCKVRFME WSENMKMRAP SFIQFEYNVK

PEECRFE
Length:307
Mass (Da):35,795
Last modified:November 16, 2011 - v1
Checksum:i418EB8C3E8AA0CA6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002991 Genomic DNA. Translation: AEM79494.1.
RefSeqiWP_014063422.1. NC_015958.1.
YP_004820778.1. NC_015958.1.

Genome annotation databases

EnsemblBacteriaiAEM79494; AEM79494; Thewi_2144.
GeneIDi11083754.
KEGGitwi:Thewi_2144.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002991 Genomic DNA. Translation: AEM79494.1.
RefSeqiWP_014063422.1. NC_015958.1.
YP_004820778.1. NC_015958.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi697303.Thewi_2144.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEM79494; AEM79494; Thewi_2144.
GeneIDi11083754.
KEGGitwi:Thewi_2144.

Phylogenomic databases

KOiK01971.

Enzyme and pathway databases

BioCyciTWIE697303:GH3A-2195-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Thermoanaerobacter wiegelii Rt8.B1."
    US DOE Joint Genome Institute
    Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Mikhailova N., Zeytun A., Daligault H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Hemme C., Woyke T.
    Submitted (AUG-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: Rt8.B1Imported.

Entry informationi

Entry nameiG2MTV9_9THEO
AccessioniPrimary (citable) accession number: G2MTV9
Entry historyi
Integrated into UniProtKB/TrEMBL: November 16, 2011
Last sequence update: November 16, 2011
Last modified: June 24, 2015
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.