Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

ATP-dependent DNA ligase

Gene

lig3

Organism
Xanthomonas axonopodis pv. citrumelo F1
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciXALF981368:GH9H-2420-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
Name:lig3Imported
ORF Names:XACM_2420Imported
OrganismiXanthomonas axonopodis pv. citrumelo F1Imported
Taxonomic identifieri981368 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas
ProteomesiUP000001276 Componenti: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G2LVW3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSLSEYRRKR SFNKTREPEP GKALPPGQRA IFVVQLHHAS RRHYDFRLQV
60 70 80 90 100
GDALKSWAVP KGPSYDPKVK RMAVEVEDHP VDYASFEGEI PKGEYGGGHV
110 120 130 140 150
AQFDHGVWAT AGDPEAQLAK GHLRFELFGN KLKGGWHLVR SGKPARQPQW
160 170 180 190 200
LLFKDDDAYA GTLEADDLLA DVAAAPAEDV RRAGAGKTQR KALTTVPPPA
210 220 230 240 250
AKRRGTWAKQ ALALSNARRA EMEDAPFAPQ LAKLGQSPPE GAQWLHEIKW
260 270 280 290 300
DGYRILATVT NGKVRLWSRN ALEWTDKTPE IADAIRSLGL RSAQIDGELI
310 320 330 340 350
AGRGTKDDFN LLQATLSGER QVPLALAVFD LLHVDGVDIS EAPLRERKRL
360 370 380 390 400
LQQVLEAAPH THLAYSSHVE GDGTEAFRVA GQQHFEGIIS KRADRPYRDG
410 420 430 440 450
RSDDWRKTKQ LASQEYAVVG YTAPKGSRSG FGSLLLATPD PVHGWLYVGR
460 470 480 490 500
VGSGFSDALM REVTPQLEGG GRKPTAHIPT EDTDLRGATW FAPRFVVEVF
510 520 530 540 550
YRGIGGQQLL RQASFKALRP DKRIADLADS DAGNGPATPS SARRSATTRA
560 570 580 590 600
AKDTATQAPK RAATRATAPA RKSAVATPSS AALPTLSSPT KLIYPDIRAT
610 620 630 640 650
KGDVWDYYQA VMDHLLPQIV GRPLSIIRCP SGAEKPCFFQ KHHTAGLERV
660 670 680 690 700
SSVKLTEETG TNAYYLVVED APGLLELVQF NALEFHPWGS HADRPDVADR
710 720 730 740 750
VVFDLDPGPD VPFAEVKRAA TDIRKLLAQL ELESFLRVSG GKGLHVVVPL
760 770 780 790 800
NPGCDWEVTK RFAKGFADAL AQAQPQRFIA TATKRLRNKR IFVDYLRNGR
810 820 830 840 850
GATAVASYSL RGRPGAPVAL PLAWSDLSKL QRADAFTLRD VPEKLRRRRK
860 870
DPWADMDGIR QNLARWAEQD QD
Length:872
Mass (Da):96,057
Last modified:November 16, 2011 - v1
Checksum:i272D7CF4869F586E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002914 Genomic DNA. Translation: AEO42681.1.
RefSeqiWP_014090385.1. NC_016010.1.
YP_004851979.1. NC_016010.1.

Genome annotation databases

EnsemblBacteriaiAEO42681; AEO42681; XACM_2420.
KEGGixax:XACM_2420.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002914 Genomic DNA. Translation: AEO42681.1.
RefSeqiWP_014090385.1. NC_016010.1.
YP_004851979.1. NC_016010.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEO42681; AEO42681; XACM_2420.
KEGGixax:XACM_2420.

Phylogenomic databases

KOiK01971.

Enzyme and pathway databases

BioCyciXALF981368:GH9H-2420-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Comparative Genomic Analysis of Xanthomonas axonopodis pv. citrumelo F1, Which Causes Citrus Bacterial Spot Disease, and Related Strains Provides Insights into Virulence and Host Specificity."
    Jalan N., Aritua V., Kumar D., Yu F., Jones J.B., Graham J.H., Setubal J.C., Wang N.
    J. Bacteriol. 193:6342-6357(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: F1Imported.

Entry informationi

Entry nameiG2LVW3_9XANT
AccessioniPrimary (citable) accession number: G2LVW3
Entry historyi
Integrated into UniProtKB/TrEMBL: November 16, 2011
Last sequence update: November 16, 2011
Last modified: May 27, 2015
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.