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G2LVW3 (G2LVW3_9XANT) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 16. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length872 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL AEO42681.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
G2LVW3 [UniParc].

Last modified November 16, 2011. Version 1.
Checksum: 272D7CF4869F586E

FASTA87296,057
        10         20         30         40         50         60 
MSLSEYRRKR SFNKTREPEP GKALPPGQRA IFVVQLHHAS RRHYDFRLQV GDALKSWAVP 

        70         80         90        100        110        120 
KGPSYDPKVK RMAVEVEDHP VDYASFEGEI PKGEYGGGHV AQFDHGVWAT AGDPEAQLAK 

       130        140        150        160        170        180 
GHLRFELFGN KLKGGWHLVR SGKPARQPQW LLFKDDDAYA GTLEADDLLA DVAAAPAEDV 

       190        200        210        220        230        240 
RRAGAGKTQR KALTTVPPPA AKRRGTWAKQ ALALSNARRA EMEDAPFAPQ LAKLGQSPPE 

       250        260        270        280        290        300 
GAQWLHEIKW DGYRILATVT NGKVRLWSRN ALEWTDKTPE IADAIRSLGL RSAQIDGELI 

       310        320        330        340        350        360 
AGRGTKDDFN LLQATLSGER QVPLALAVFD LLHVDGVDIS EAPLRERKRL LQQVLEAAPH 

       370        380        390        400        410        420 
THLAYSSHVE GDGTEAFRVA GQQHFEGIIS KRADRPYRDG RSDDWRKTKQ LASQEYAVVG 

       430        440        450        460        470        480 
YTAPKGSRSG FGSLLLATPD PVHGWLYVGR VGSGFSDALM REVTPQLEGG GRKPTAHIPT 

       490        500        510        520        530        540 
EDTDLRGATW FAPRFVVEVF YRGIGGQQLL RQASFKALRP DKRIADLADS DAGNGPATPS 

       550        560        570        580        590        600 
SARRSATTRA AKDTATQAPK RAATRATAPA RKSAVATPSS AALPTLSSPT KLIYPDIRAT 

       610        620        630        640        650        660 
KGDVWDYYQA VMDHLLPQIV GRPLSIIRCP SGAEKPCFFQ KHHTAGLERV SSVKLTEETG 

       670        680        690        700        710        720 
TNAYYLVVED APGLLELVQF NALEFHPWGS HADRPDVADR VVFDLDPGPD VPFAEVKRAA 

       730        740        750        760        770        780 
TDIRKLLAQL ELESFLRVSG GKGLHVVVPL NPGCDWEVTK RFAKGFADAL AQAQPQRFIA 

       790        800        810        820        830        840 
TATKRLRNKR IFVDYLRNGR GATAVASYSL RGRPGAPVAL PLAWSDLSKL QRADAFTLRD 

       850        860        870 
VPEKLRRRRK DPWADMDGIR QNLARWAEQD QD 

« Hide

References

[1]"Comparative Genomic Analysis of Xanthomonas axonopodis pv. citrumelo F1, Which Causes Citrus Bacterial Spot Disease, and Related Strains Provides Insights into Virulence and Host Specificity."
Jalan N., Aritua V., Kumar D., Yu F., Jones J.B., Graham J.H., Setubal J.C., Wang N.
J. Bacteriol. 193:6342-6357(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: F1 EMBL AEO42681.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002914 Genomic DNA. Translation: AEO42681.1.
RefSeqYP_004851979.1. NC_016010.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEO42681; AEO42681; XACM_2420.
GeneID11131677.
KEGGxax:XACM_2420.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycXALF981368:GH9H-2420-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameG2LVW3_9XANT
AccessionPrimary (citable) accession number: G2LVW3
Entry history
Integrated into UniProtKB/TrEMBL: November 16, 2011
Last sequence update: November 16, 2011
Last modified: April 16, 2014
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)