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G2LE15 (G2LE15_CHLTF) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 9. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Ribonuclease PH HAMAP-Rule MF_00564
Short name=RNase PH HAMAP-Rule MF_00564
EC=2.7.7.56 HAMAP-Rule MF_00564
Alternative name(s):
tRNA nucleotidyltransferase HAMAP-Rule MF_00564
Gene names
Name:rph HAMAP-Rule MF_00564
Ordered Locus Names:Cabther_A0311 EMBL AEP11077.1
OrganismChloracidobacterium thermophilum (strain B) [Complete proteome] [HAMAP] EMBL AEP11077.1
Taxonomic identifier981222 [NCBI]
Taxonomic lineageBacteria › Acidobacteria › Candidatus Chloracidobacterium ›

Protein attributes

Sequence length240 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates By similarity. HAMAP-Rule MF_00564 SAAS SAAS002381

Catalytic activity

tRNA(n+1) + phosphate = tRNA(n) + a nucleoside diphosphate. HAMAP-Rule MF_00564 SAAS SAAS002381

Sequence similarities

Belongs to the RNase PH family. HAMAP-Rule MF_00564

Sequences

Sequence LengthMass (Da)Tools
G2LE15 [UniParc].

Last modified November 16, 2011. Version 1.
Checksum: 26A131F94DDEA922

FASTA24026,006
        10         20         30         40         50         60 
MRSGGRAPNA LRTVQLTPHV NKYAEGSVQV EFGDTRVICL ASVEEKVPPF LKGKGTGWVT 

        70         80         90        100        110        120 
AEYAMLPRAT DQRTPREVTR GNPSGRTHEI QRLIGRSLRA VVDFTKLGER TIYLDCDVIQ 

       130        140        150        160        170        180 
ADGGTRTAAI TGAFVALVLA ARKLQAAGVV TDMPVKDYLA AVSVGTVNGT PLLDLDYNED 

       190        200        210        220        230        240 
SKAEVDMNVV GTGDGRLVEV QGTAEQRPFS RENMNALLDL AMQGIRELIT LQRQLLGLLE

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References

[1]"Complete genome of Candidatus Chloracidobacterium thermophilum, a chlorophyll-based photoheterotroph belonging to the phylum Acidobacteria."
Garcia Costas A.M., Liu Z., Tomsho L.P., Schuster S.C., Ward D.M., Bryant D.A.
Environ. Microbiol. 14:177-190(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: B EMBL AEP11077.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP002514 Genomic DNA. Translation: AEP11077.1.
RefSeqYP_004861593.1. NC_016024.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEP11077; AEP11077; Cabther_A0311.
GeneID11171223.
KEGGctm:Cabther_A0311.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK00989.

Enzyme and pathway databases

BioCycCTHE981222:GHDQ-1149-MONOMER.

Family and domain databases

HAMAPMF_00564. RNase_PH.
InterProIPR001247. ExoRNase_PH_dom1.
IPR015847. ExoRNase_PH_dom2.
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR002381. RNase_PH_bac-type.
IPR018336. RNase_PH_CS.
[Graphical view]
PfamPF01138. RNase_PH. 1 hit.
PF03725. RNase_PH_C. 1 hit.
[Graphical view]
SUPFAMSSF55666. 3_ExoRNase. 1 hit.
SSF54211. Ribosomal_S5_D2-typ_fold. 1 hit.
TIGRFAMsTIGR01966. RNasePH. 1 hit.
PROSITEPS01277. RIBONUCLEASE_PH. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameG2LE15_CHLTF
AccessionPrimary (citable) accession number: G2LE15
Entry history
Integrated into UniProtKB/TrEMBL: November 16, 2011
Last sequence update: November 16, 2011
Last modified: April 3, 2013
This is version 9 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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