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G2L4S2 (G2L4S2_PSEAI) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 15. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:ligD EMBL AEO75385.1
ORF Names:PAM18_2902 EMBL AEO75385.1
OrganismPseudomonas aeruginosa M18 [Complete proteome] EMBL AEO75385.1
Taxonomic identifier941193 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas

Protein attributes

Sequence length840 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
G2L4S2 [UniParc].

Last modified November 16, 2011. Version 1.
Checksum: 0D03156CCCA948CA

FASTA84094,026
        10         20         30         40         50         60 
MPSSKPLAEY ARKRDFRQTP EPSGRKPRKD STGLLRYCVQ KHDASRLHYD FRLELDGTLK 

        70         80         90        100        110        120 
SWAVPKGPCL DPAVKRLAVQ VEDHPLDYAD FEGSIPQGHY GAGDVIVWDR GAWTPLDDPR 

       130        140        150        160        170        180 
EGLEKGHLSF ALDGEKLSGR WHLIRTNLRG KQPQWFLVKA KDGEARSLDR FDVLKERPDS 

       190        200        210        220        230        240 
VLSERTLLPR HGETATPAAR PARRGKSGGK TPMPEWIAPE LASLVEQPPR GEWAYELKLD 

       250        260        270        280        290        300 
GYRLMSRIED GHVRLLTRNG HDWTERLPHL EKALAGLGLQ RSWLDGELVV LDEEGRPDFQ 

       310        320        330        340        350        360 
ALQNAFEEGR GENILYVLFD LPYHEGEDLR DVALEERRAR LEALLEGRDE DPLRFSATLA 

       370        380        390        400        410        420 
EDPRDLLASA CKLGLEGVIG KRLGSAYRSR RSNDWIKLKC QLRQEFVIVG YTEPKGSRRH 

       430        440        450        460        470        480 
IGALLLGLYS PDEERRLRYA GKVGSGFTAA SLKNVRERLE PLAVRSSPLA KVPPARETGS 

       490        500        510        520        530        540 
VQWVRPQQLC EVSYAQMTRG GIIRQAVFHG LREDKPAREV TGERPAGPPP LRGARKAGAG 

       550        560        570        580        590        600 
ASRAATAGVR ISHPQRLIDP SIQASKLELA EFHARYADLL LRDLRERPVS LVRGPDGIGG 

       610        620        630        640        650        660 
ELFFQKHAAR LKIPGIVQLD PALDPGHPPL LQIRSAEALV GAVQMGSIEF HTWNASLANL 

       670        680        690        700        710        720 
ERPDRFVLDL DPDPALPWKR MLEATQLSLT LLDELGLRAF LKTSGGKGMH LLVPLERRHG 

       730        740        750        760        770        780 
WDEVKDFAQA ISQHLARLMP ERFSAVSGPR NRVGKIFVDY LRNSRGASTV AAYSVRAREG 

       790        800        810        820        830        840 
LPVSVPVFRE ELDSLQGANQ WNLRSLPQRL DELAGDDPWA DYAGTRQRIS AAMRRQLGRG 

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References

[1]"Genomic analysis and temperature-dependent transcriptome profiles of the rhizosphere originating strain Pseudomonas aeruginosa M18."
Wu D.Q., Ye J., Ou H.Y., Wei X., Huang X., He Y.W., Xu Y.
BMC Genomics 12:438-438(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: M18 EMBL AEO75385.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002496 Genomic DNA. Translation: AEO75385.1.
RefSeqYP_005975487.1. NC_017548.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEO75385; AEO75385; PAM18_2902.
GeneID12566952.
KEGGpaf:PAM18_2902.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycPAER941193:GLIQ-2934-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameG2L4S2_PSEAI
AccessionPrimary (citable) accession number: G2L4S2
Entry history
Integrated into UniProtKB/TrEMBL: November 16, 2011
Last sequence update: November 16, 2011
Last modified: April 16, 2014
This is version 15 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)