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G2L4S2

- G2L4S2_PSEAI

UniProt

G2L4S2 - G2L4S2_PSEAI

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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

ligD

Organism
Pseudomonas aeruginosa M18
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPAER941193:GLIQ-2934-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
Name:ligDImported
ORF Names:PAM18_2902Imported
OrganismiPseudomonas aeruginosa M18Imported
Taxonomic identifieri941193 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000009043: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G2L4S2-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MPSSKPLAEY ARKRDFRQTP EPSGRKPRKD STGLLRYCVQ KHDASRLHYD
60 70 80 90 100
FRLELDGTLK SWAVPKGPCL DPAVKRLAVQ VEDHPLDYAD FEGSIPQGHY
110 120 130 140 150
GAGDVIVWDR GAWTPLDDPR EGLEKGHLSF ALDGEKLSGR WHLIRTNLRG
160 170 180 190 200
KQPQWFLVKA KDGEARSLDR FDVLKERPDS VLSERTLLPR HGETATPAAR
210 220 230 240 250
PARRGKSGGK TPMPEWIAPE LASLVEQPPR GEWAYELKLD GYRLMSRIED
260 270 280 290 300
GHVRLLTRNG HDWTERLPHL EKALAGLGLQ RSWLDGELVV LDEEGRPDFQ
310 320 330 340 350
ALQNAFEEGR GENILYVLFD LPYHEGEDLR DVALEERRAR LEALLEGRDE
360 370 380 390 400
DPLRFSATLA EDPRDLLASA CKLGLEGVIG KRLGSAYRSR RSNDWIKLKC
410 420 430 440 450
QLRQEFVIVG YTEPKGSRRH IGALLLGLYS PDEERRLRYA GKVGSGFTAA
460 470 480 490 500
SLKNVRERLE PLAVRSSPLA KVPPARETGS VQWVRPQQLC EVSYAQMTRG
510 520 530 540 550
GIIRQAVFHG LREDKPAREV TGERPAGPPP LRGARKAGAG ASRAATAGVR
560 570 580 590 600
ISHPQRLIDP SIQASKLELA EFHARYADLL LRDLRERPVS LVRGPDGIGG
610 620 630 640 650
ELFFQKHAAR LKIPGIVQLD PALDPGHPPL LQIRSAEALV GAVQMGSIEF
660 670 680 690 700
HTWNASLANL ERPDRFVLDL DPDPALPWKR MLEATQLSLT LLDELGLRAF
710 720 730 740 750
LKTSGGKGMH LLVPLERRHG WDEVKDFAQA ISQHLARLMP ERFSAVSGPR
760 770 780 790 800
NRVGKIFVDY LRNSRGASTV AAYSVRAREG LPVSVPVFRE ELDSLQGANQ
810 820 830 840
WNLRSLPQRL DELAGDDPWA DYAGTRQRIS AAMRRQLGRG
Length:840
Mass (Da):94,026
Last modified:November 16, 2011 - v1
Checksum:i0D03156CCCA948CA
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002496 Genomic DNA. Translation: AEO75385.1.
RefSeqiYP_005975487.1. NC_017548.1.

Genome annotation databases

EnsemblBacteriaiAEO75385; AEO75385; PAM18_2902.
GeneIDi12566952.
KEGGipaf:PAM18_2902.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002496 Genomic DNA. Translation: AEO75385.1 .
RefSeqi YP_005975487.1. NC_017548.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEO75385 ; AEO75385 ; PAM18_2902 .
GeneIDi 12566952.
KEGGi paf:PAM18_2902.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci PAER941193:GLIQ-2934-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Genomic analysis and temperature-dependent transcriptome profiles of the rhizosphere originating strain Pseudomonas aeruginosa M18."
    Wu D.Q., Ye J., Ou H.Y., Wei X., Huang X., He Y.W., Xu Y.
    BMC Genomics 12:438-438(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: M18Imported.

Entry informationi

Entry nameiG2L4S2_PSEAI
AccessioniPrimary (citable) accession number: G2L4S2
Entry historyi
Integrated into UniProtKB/TrEMBL: November 16, 2011
Last sequence update: November 16, 2011
Last modified: October 29, 2014
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3