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Protein

Superoxide dismutase

Gene

sodB

Organism
Sphingobium sp. SYK-6
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Destroys radicals which are normally produced within the cells and which are toxic to biological systems.UniRule annotation

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.UniRule annotation

GO - Molecular functioni

  1. metal ion binding Source: InterPro
  2. superoxide dismutase activity Source: UniProtKB-EC
Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseUniRule annotationImported

Enzyme and pathway databases

BioCyciSSP627192:GI2Q-3670-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutaseUniRule annotation (EC:1.15.1.1UniRule annotation)
Gene namesi
Name:sodBImported
ORF Names:SLG_36210Imported
OrganismiSphingobium sp. SYK-6Imported
Taxonomic identifieri627192 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaSphingomonadalesSphingomonadaceaeSphingobium
ProteomesiUP000001275 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliG2IQC2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the iron/manganese superoxide dismutase family.UniRule annotation

Phylogenomic databases

KOiK04564.

Family and domain databases

InterProiIPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
[Graphical view]
PANTHERiPTHR11404. PTHR11404. 1 hit.
PfamiPF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000349. SODismutase. 1 hit.
PRINTSiPR01703. MNSODISMTASE.
SUPFAMiSSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEiPS00088. SOD_MN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G2IQC2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAFTLPDLPY AKTAFGEDMS AETFDYHHGK HHNAYVTKAN ELVAADPALQ
60 70 80 90 100
GKSLVELIRT AKGGLFNQVG QIWNHSFFWQ CLSPETQEPT GKLAELIQEG
110 120 130 140 150
FGSTDALIEK LKAEAVGHFA SGWAALNLTD GKLEVTSYHD ADCPVAHGAT
160 170 180 190 200
PLFILDVWEH AYYIDYRNAR PNFADTILKK HVNWAFVAEN LDGNGAERAN

QPG
Length:203
Mass (Da):22,388
Last modified:November 15, 2011 - v1
Checksum:iAF4E23C25A56880B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP012222 Genomic DNA. Translation: BAK68296.1.
RefSeqiWP_014077935.1. NC_015976.1.
YP_004836753.1. NC_015976.1.

Genome annotation databases

EnsemblBacteriaiBAK68296; BAK68296; SLG_36210.
KEGGissy:SLG_36210.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP012222 Genomic DNA. Translation: BAK68296.1.
RefSeqiWP_014077935.1. NC_015976.1.
YP_004836753.1. NC_015976.1.

3D structure databases

ProteinModelPortaliG2IQC2.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAK68296; BAK68296; SLG_36210.
KEGGissy:SLG_36210.

Phylogenomic databases

KOiK04564.

Enzyme and pathway databases

BioCyciSSP627192:GI2Q-3670-MONOMER.

Family and domain databases

InterProiIPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
[Graphical view]
PANTHERiPTHR11404. PTHR11404. 1 hit.
PfamiPF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000349. SODismutase. 1 hit.
PRINTSiPR01703. MNSODISMTASE.
SUPFAMiSSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEiPS00088. SOD_MN. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiG2IQC2_9SPHN
AccessioniPrimary (citable) accession number: G2IQC2
Entry historyi
Integrated into UniProtKB/TrEMBL: November 15, 2011
Last sequence update: November 15, 2011
Last modified: March 31, 2015
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.