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G2IPV4

- G2IPV4_9SPHN

UniProt

G2IPV4 - G2IPV4_9SPHN

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Protein
Submitted name:

DNA ligase

Gene

lig

Organism
Sphingobium sp. SYK-6
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSSP627192:GI2Q-1116-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
Name:ligImported
ORF Names:SLG_11070Imported
OrganismiSphingobium sp. SYK-6Imported
Taxonomic identifieri627192 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaSphingomonadalesSphingomonadaceaeSphingobium
ProteomesiUP000001275: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G2IPV4-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MRRFADLFQR LDRSTGTLEK RAALVRYFRD APPRDAAWAL WLLAGNKIGG
60 70 80 90 100
PRAKLAGSRE LRAWIAETSG TPEWLVDASY DQVGDLAETL ALLLDDPADA
110 120 130 140 150
SEDIPLATWI EDILLPVANA PEADRRAVVE RAWCTLPFGE RFLFNKLLTG
160 170 180 190 200
SLRVGVSRGL VQQALAELSG VEIALIAQRM LGAWAPSADF LAGLLSPEPQ
210 220 230 240 250
PGDMASPFPF FLASPLDQPA EALGPLEDWL VEWKWDGIRL QLIRRADDLA
260 270 280 290 300
LWSRGEERLD GRFPEIEAAA ALLPRHAVID GELLAWDAGD APLPFTALQT
310 320 330 340 350
RIQRLKPGAR TLAQAPARVL AYDLLELDGT DLRDRPLTDR RAALAALLAT
360 370 380 390 400
LDDRRIALSP EIMADNWAHA AALREMARER GVEGLMLKRR SSPYQHGRRR
410 420 430 440 450
GDWWKWKVDP MTIDAVLIYA QSGHGRRSTL HTDYTFGLWD GDVLVPVAKA
460 470 480 490 500
YSGLSDAEIL QVDQWVRKHT RERFGPVRSV EPELVFELAF EAVNLSRRHK
510 520 530
SGVAVRFPRI LRWRTDKPAS EADRLETLKA LALPSAGG
Length:538
Mass (Da):59,924
Last modified:November 16, 2011 - v1
Checksum:iF6E8ABC44F5F7E38
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP012222 Genomic DNA. Translation: BAK65782.1.
RefSeqiWP_014075433.1. NC_015976.1.
YP_004834239.1. NC_015976.1.

Genome annotation databases

EnsemblBacteriaiBAK65782; BAK65782; SLG_11070.
GeneIDi11144050.
KEGGissy:SLG_11070.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP012222 Genomic DNA. Translation: BAK65782.1 .
RefSeqi WP_014075433.1. NC_015976.1.
YP_004834239.1. NC_015976.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAK65782 ; BAK65782 ; SLG_11070 .
GeneIDi 11144050.
KEGGi ssy:SLG_11070.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci SSP627192:GI2Q-1116-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiG2IPV4_9SPHN
AccessioniPrimary (citable) accession number: G2IPV4
Entry historyi
Integrated into UniProtKB/TrEMBL: November 16, 2011
Last sequence update: November 16, 2011
Last modified: October 1, 2014
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3