G2IPV4 (G2IPV4_9SPHN) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA ligase EMBL BAK65782.1
EC=6.5.1.1 EMBL BAK65782.1

Gene names

Name:	lig EMBL BAK65782.1
ORF Names:	SLG_11070 EMBL BAK65782.1

Organism

Sphingobium sp. SYK-6 EMBL BAK65782.1

Taxonomic identifier

627192 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Sphingomonadales › Sphingomonadaceae › Sphingobium

Protein attributes

Sequence length	538 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL BAK65782.1
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	G2IPV4 [UniParc]. Last modified November 16, 2011. Version 1. Checksum: F6E8ABC44F5F7E38	FASTA	538	59,924
	10 20 30 40 50 60 MRRFADLFQR LDRSTGTLEK RAALVRYFRD APPRDAAWAL WLLAGNKIGG PRAKLAGSRE 70 80 90 100 110 120 LRAWIAETSG TPEWLVDASY DQVGDLAETL ALLLDDPADA SEDIPLATWI EDILLPVANA 130 140 150 160 170 180 PEADRRAVVE RAWCTLPFGE RFLFNKLLTG SLRVGVSRGL VQQALAELSG VEIALIAQRM 190 200 210 220 230 240 LGAWAPSADF LAGLLSPEPQ PGDMASPFPF FLASPLDQPA EALGPLEDWL VEWKWDGIRL 250 260 270 280 290 300 QLIRRADDLA LWSRGEERLD GRFPEIEAAA ALLPRHAVID GELLAWDAGD APLPFTALQT 310 320 330 340 350 360 RIQRLKPGAR TLAQAPARVL AYDLLELDGT DLRDRPLTDR RAALAALLAT LDDRRIALSP 370 380 390 400 410 420 EIMADNWAHA AALREMARER GVEGLMLKRR SSPYQHGRRR GDWWKWKVDP MTIDAVLIYA 430 440 450 460 470 480 QSGHGRRSTL HTDYTFGLWD GDVLVPVAKA YSGLSDAEIL QVDQWVRKHT RERFGPVRSV 490 500 510 520 530 EPELVFELAF EAVNLSRRHK SGVAVRFPRI LRWRTDKPAS EADRLETLKA LALPSAGG

References

[1]

"Complete Genome Sequence of Sphingobium sp. Strain SYK-6, a Degrader of Lignin-Derived Biaryls and Monoaryls." Masai E., Kamimura N., Kasai D., Oguchi A., Ankai A., Fukui S., Takahashi M., Yashiro I., Sasaki H., Harada T., Nakamura S., Katano Y., Narita-Yamada S., Nakazawa H., Hara H., Katayama Y., Fukuda M., Yamazaki S., Fujita N. J. Bacteriol. 194:534-535(2012) Cited for: NUCLEOTIDE SEQUENCE. Strain: SYK-6 EMBL BAK65782.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AP012222 Genomic DNA. Translation: BAK65782.1.
RefSeq	YP_004834239.1. NC_015976.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	BAK65782; BAK65782; SLG_11070.
GeneID	11144050.
KEGG	ssy:SLG_11070.
Phylogenomic databases
KO	K01971.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

G2IPV4_9SPHN

Accession

Primary (citable) accession number: G2IPV4

Entry history

Integrated into UniProtKB/TrEMBL:	November 16, 2011
Last sequence update:	November 16, 2011
Last modified:	April 3, 2013
This is version 11 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)