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G2IPV4 (G2IPV4_9SPHN) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 16. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=6.5.1.1 EMBL BAK65782.1
Gene names
Name:lig EMBL BAK65782.1
ORF Names:SLG_11070 EMBL BAK65782.1
OrganismSphingobium sp. SYK-6 [Complete proteome] EMBL BAK65782.1
Taxonomic identifier627192 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaSphingomonadalesSphingomonadaceaeSphingobium

Protein attributes

Sequence length538 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL BAK65782.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
G2IPV4 [UniParc].

Last modified November 16, 2011. Version 1.
Checksum: F6E8ABC44F5F7E38

FASTA53859,924
        10         20         30         40         50         60 
MRRFADLFQR LDRSTGTLEK RAALVRYFRD APPRDAAWAL WLLAGNKIGG PRAKLAGSRE 

        70         80         90        100        110        120 
LRAWIAETSG TPEWLVDASY DQVGDLAETL ALLLDDPADA SEDIPLATWI EDILLPVANA 

       130        140        150        160        170        180 
PEADRRAVVE RAWCTLPFGE RFLFNKLLTG SLRVGVSRGL VQQALAELSG VEIALIAQRM 

       190        200        210        220        230        240 
LGAWAPSADF LAGLLSPEPQ PGDMASPFPF FLASPLDQPA EALGPLEDWL VEWKWDGIRL 

       250        260        270        280        290        300 
QLIRRADDLA LWSRGEERLD GRFPEIEAAA ALLPRHAVID GELLAWDAGD APLPFTALQT 

       310        320        330        340        350        360 
RIQRLKPGAR TLAQAPARVL AYDLLELDGT DLRDRPLTDR RAALAALLAT LDDRRIALSP 

       370        380        390        400        410        420 
EIMADNWAHA AALREMARER GVEGLMLKRR SSPYQHGRRR GDWWKWKVDP MTIDAVLIYA 

       430        440        450        460        470        480 
QSGHGRRSTL HTDYTFGLWD GDVLVPVAKA YSGLSDAEIL QVDQWVRKHT RERFGPVRSV 

       490        500        510        520        530 
EPELVFELAF EAVNLSRRHK SGVAVRFPRI LRWRTDKPAS EADRLETLKA LALPSAGG 

« Hide

References

[1]"Complete Genome Sequence of Sphingobium sp. Strain SYK-6, a Degrader of Lignin-Derived Biaryls and Monoaryls."
Masai E., Kamimura N., Kasai D., Oguchi A., Ankai A., Fukui S., Takahashi M., Yashiro I., Sasaki H., Harada T., Nakamura S., Katano Y., Narita-Yamada S., Nakazawa H., Hara H., Katayama Y., Fukuda M., Yamazaki S., Fujita N.
J. Bacteriol. 194:534-535(2012)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: SYK-6 EMBL BAK65782.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP012222 Genomic DNA. Translation: BAK65782.1.
RefSeqYP_004834239.1. NC_015976.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAK65782; BAK65782; SLG_11070.
GeneID11144050.
KEGGssy:SLG_11070.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycSSP627192:GI2Q-1116-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR04120. DNA_lig_bact. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameG2IPV4_9SPHN
AccessionPrimary (citable) accession number: G2IPV4
Entry history
Integrated into UniProtKB/TrEMBL: November 16, 2011
Last sequence update: November 16, 2011
Last modified: April 16, 2014
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)