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G2IP73 (G2IP73_9SPHN) Unreviewed, UniProtKB/TrEMBL

Last modified January 22, 2014. Version 14. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=6.5.1.1 EMBL BAK65712.1
Gene names
ORF Names:SLG_10370 EMBL BAK65712.1
OrganismSphingobium sp. SYK-6 [Complete proteome] EMBL BAK65712.1
Taxonomic identifier627192 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaSphingomonadalesSphingomonadaceaeSphingobium

Protein attributes

Sequence length345 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL BAK65712.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA ligation involved in DNA repair

Inferred from electronic annotation. Source: InterPro

DNA recombination

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
G2IP73 [UniParc].

Last modified November 16, 2011. Version 1.
Checksum: F14C862BF356D9B6

FASTA34538,340
        10         20         30         40         50         60 
MAGRLRAWFD DLLPMEARLV AELPSGDGWQ FEPKWDGFRV LILKDGPDVE LKSKSGKSLT 

        70         80         90        100        110        120 
RFFPELAAAI GALGDRALSL DGEIILPVSD MLSFDALQQR LHPAASRIAR LSRETPAEIM 

       130        140        150        160        170        180 
LFDVLHRGST RLADRPLEER RTALEAWHAT IRSPVLHLSP MTRDARQAKA WLDRTGGALD 

       190        200        210        220        230        240 
GIVAKRRDAP YRGGERAMAK IKQQRTADCV VGGFREADGA VVSLLLGLYG PDGKLNHVGF 

       250        260        270        280        290        300 
TSAIARDQRR ELRDRLLPLV APPGFTGKAP GGPSRWSGKR TSDWLPIKPS LVVEVRYDQV 

       310        320        330        340 
TGGRFRHGTR LLRWRPDKAP EQCTSDQLEQ PLSPAQLGSL IREWE 

« Hide

References

[1]"Complete Genome Sequence of Sphingobium sp. Strain SYK-6, a Degrader of Lignin-Derived Biaryls and Monoaryls."
Masai E., Kamimura N., Kasai D., Oguchi A., Ankai A., Fukui S., Takahashi M., Yashiro I., Sasaki H., Harada T., Nakamura S., Katano Y., Narita-Yamada S., Nakazawa H., Hara H., Katayama Y., Fukuda M., Yamazaki S., Fujita N.
J. Bacteriol. 194:534-535(2012)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: SYK-6 EMBL BAK65712.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP012222 Genomic DNA. Translation: BAK65712.1.
RefSeqYP_004834169.1. NC_015976.1.

3D structure databases

ProteinModelPortalG2IP73.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAK65712; BAK65712; SLG_10370.
GeneID11143988.
KEGGssy:SLG_10370.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycSSP627192:GI2Q-1044-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameG2IP73_9SPHN
AccessionPrimary (citable) accession number: G2IP73
Entry history
Integrated into UniProtKB/TrEMBL: November 16, 2011
Last sequence update: November 16, 2011
Last modified: January 22, 2014
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)