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G1U472

- G1U472_RABIT

UniProt

G1U472 - G1U472_RABIT

Protein
Submitted name:

Uncharacterized protein

Gene

LOC100351184

Organism
Oryctolagus cuniculus (Rabbit)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
  1. Functioni

    GO - Molecular functioni

    1. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal proteinUniRule annotation

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Uncharacterized proteinImported
    Gene namesi
    Name:LOC100351184Imported
    Synonyms:LOC100343884Imported
    OrganismiOryctolagus cuniculus (Rabbit)Imported
    Taxonomic identifieri9986 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresLagomorphaLeporidaeOryctolagus
    ProteomesiUP000001811: Chromosome 17

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    4KZXX-ray7.81O1-151[»]
    4KZYX-ray7.01O1-151[»]
    4KZZX-ray7.03O1-151[»]
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein S11P family.UniRule annotation

    Phylogenomic databases

    GeneTreeiENSGT00390000000703.
    OrthoDBiEOG77DJ81.
    TreeFamiTF300125.

    Family and domain databases

    Gene3Di3.30.420.80. 1 hit.
    HAMAPiMF_01310. Ribosomal_S11.
    InterProiIPR001971. Ribosomal_S11.
    IPR018102. Ribosomal_S11_CS.
    [Graphical view]
    PANTHERiPTHR11759. PTHR11759. 1 hit.
    PfamiPF00411. Ribosomal_S11. 1 hit.
    [Graphical view]
    PIRSFiPIRSF002131. Ribosomal_S11. 1 hit.
    PROSITEiPS00054. RIBOSOMAL_S11. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    G1U472-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAPRKGKEKK EEQVISLGPQ VAEGENVFGV CHIFASFNDT FVHVTDLSGK    50
    ETICRVTGGM KVKADRDESS PYAAMLAAQD VAQRCKELGI TALHIKLRAT 100
    GGNRTKTPGP GAQSALRALA RSGMKIGRIE DVTPIPSDST RRKGGRRGRR 150
    L 151
    Length:151
    Mass (Da):16,273
    Last modified:October 19, 2011 - v1
    Checksum:i4F4387F9FADAC278
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AAGW02024470 Genomic DNA. No translation available.
    AAGW02048509 Genomic DNA. No translation available.
    RefSeqiXP_002710354.1. XM_002710308.2.
    XP_002710355.1. XM_002710309.2.
    UniGeneiOcu.1603.

    Genome annotation databases

    EnsembliENSOCUT00000028522; ENSOCUP00000020690; ENSOCUG00000025034.
    ENSOCUT00000029787; ENSOCUP00000024191; ENSOCUG00000026323.
    GeneIDi100343884.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AAGW02024470 Genomic DNA. No translation available.
    AAGW02048509 Genomic DNA. No translation available.
    RefSeqi XP_002710354.1. XM_002710308.2.
    XP_002710355.1. XM_002710309.2.
    UniGenei Ocu.1603.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    4KZX X-ray 7.81 O 1-151 [» ]
    4KZY X-ray 7.01 O 1-151 [» ]
    4KZZ X-ray 7.03 O 1-151 [» ]
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSOCUT00000028522 ; ENSOCUP00000020690 ; ENSOCUG00000025034 .
    ENSOCUT00000029787 ; ENSOCUP00000024191 ; ENSOCUG00000026323 .
    GeneIDi 100343884.

    Organism-specific databases

    CTDi 6208.

    Phylogenomic databases

    GeneTreei ENSGT00390000000703.
    OrthoDBi EOG77DJ81.
    TreeFami TF300125.

    Family and domain databases

    Gene3Di 3.30.420.80. 1 hit.
    HAMAPi MF_01310. Ribosomal_S11.
    InterProi IPR001971. Ribosomal_S11.
    IPR018102. Ribosomal_S11_CS.
    [Graphical view ]
    PANTHERi PTHR11759. PTHR11759. 1 hit.
    Pfami PF00411. Ribosomal_S11. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF002131. Ribosomal_S11. 1 hit.
    PROSITEi PS00054. RIBOSOMAL_S11. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome Sequence of Oryctolagus cuniculus (European rabbit)."
      The Genome Sequencing Platform
      Di Palma F., Heiman D., Young S., Gnerre S., Johnson J., Lander E.S., Lindblad-Toh K.
      Submitted (AUG-2009) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ThorbeckeImported.
    2. "A high-resolution map of human evolutionary constraint using 29 mammals."
      Lindblad-Toh K., Garber M., Zuk O., Lin M.F., Parker B.J., Washietl S., Kheradpour P., Ernst J., Jordan G., Mauceli E., Ward L.D., Lowe C.B., Holloway A.K., Clamp M., Gnerre S., Alfoldi J., Beal K., Chang J.
      , Clawson H., Cuff J., Di Palma F., Fitzgerald S., Flicek P., Guttman M., Hubisz M.J., Jaffe D.B., Jungreis I., Kent W.J., Kostka D., Lara M., Martins A.L., Massingham T., Moltke I., Raney B.J., Rasmussen M.D., Robinson J., Stark A., Vilella A.J., Wen J., Xie X., Zody M.C., Baldwin J., Bloom T., Chin C.W., Heiman D., Nicol R., Nusbaum C., Young S., Wilkinson J., Worley K.C., Kovar C.L., Muzny D.M., Gibbs R.A., Cree A., Dihn H.H., Fowler G., Jhangiani S., Joshi V., Lee S., Lewis L.R., Nazareth L.V., Okwuonu G., Santibanez J., Warren W.C., Mardis E.R., Weinstock G.M., Wilson R.K., Delehaunty K., Dooling D., Fronik C., Fulton L., Fulton B., Graves T., Minx P., Sodergren E., Birney E., Margulies E.H., Herrero J., Green E.D., Haussler D., Siepel A., Goldman N., Pollard K.S., Pedersen J.S., Lander E.S., Kellis M.
      Nature 478:476-482(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ThorbeckeImported.
    3. Ensembl
      Submitted (SEP-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: ThorbeckeImported.
    4. "The initiation of mammalian protein synthesis and mRNA scanning mechanism."
      Lomakin I.B., Steitz T.A.
      Nature 500:307-311(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (7.01 ANGSTROMS).

    Entry informationi

    Entry nameiG1U472_RABIT
    AccessioniPrimary (citable) accession number: G1U472
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 19, 2011
    Last sequence update: October 19, 2011
    Last modified: October 1, 2014
    This is version 27 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    3D-structureImported, Complete proteome, Reference proteomeImported

    External Data

    Dasty 3