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G1U472 (G1U472_RABIT) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 25. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length151 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Sequence similarities

Belongs to the ribosomal protein S11P family. RuleBase RU003629

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSOCUP00000024191 Ensembl ENSOCUP00000020690

Ontologies

Keywords
   Molecular functionRibonucleoprotein
Ribosomal protein RuleBase RU003629
   Technical term3D-structure PDB 4KZX PDB 4KZY PDB 4KZZ
Complete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: InterPro

   Cellular_componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionstructural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
G1U472 [UniParc].

Last modified October 19, 2011. Version 1.
Checksum: 4F4387F9FADAC278

FASTA15116,273
        10         20         30         40         50         60 
MAPRKGKEKK EEQVISLGPQ VAEGENVFGV CHIFASFNDT FVHVTDLSGK ETICRVTGGM 

        70         80         90        100        110        120 
KVKADRDESS PYAAMLAAQD VAQRCKELGI TALHIKLRAT GGNRTKTPGP GAQSALRALA 

       130        140        150 
RSGMKIGRIE DVTPIPSDST RRKGGRRGRR L 

« Hide

References

« Hide 'large scale' references
[1]"Genome Sequence of Oryctolagus cuniculus (European rabbit)."
The Genome Sequencing Platform
Di Palma F., Heiman D., Young S., Gnerre S., Johnson J., Lander E.S., Lindblad-Toh K.
Submitted (AUG-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Thorbecke Ensembl ENSOCUP00000024191 Ensembl ENSOCUP00000020690.
[2]"A high-resolution map of human evolutionary constraint using 29 mammals."
Lindblad-Toh K., Garber M., Zuk O., Lin M.F., Parker B.J., Washietl S., Kheradpour P., Ernst J., Jordan G., Mauceli E., Ward L.D., Lowe C.B., Holloway A.K., Clamp M., Gnerre S., Alfoldi J., Beal K., Chang J. expand/collapse author list , Clawson H., Cuff J., Di Palma F., Fitzgerald S., Flicek P., Guttman M., Hubisz M.J., Jaffe D.B., Jungreis I., Kent W.J., Kostka D., Lara M., Martins A.L., Massingham T., Moltke I., Raney B.J., Rasmussen M.D., Robinson J., Stark A., Vilella A.J., Wen J., Xie X., Zody M.C., Baldwin J., Bloom T., Chin C.W., Heiman D., Nicol R., Nusbaum C., Young S., Wilkinson J., Worley K.C., Kovar C.L., Muzny D.M., Gibbs R.A., Cree A., Dihn H.H., Fowler G., Jhangiani S., Joshi V., Lee S., Lewis L.R., Nazareth L.V., Okwuonu G., Santibanez J., Warren W.C., Mardis E.R., Weinstock G.M., Wilson R.K., Delehaunty K., Dooling D., Fronik C., Fulton L., Fulton B., Graves T., Minx P., Sodergren E., Birney E., Margulies E.H., Herrero J., Green E.D., Haussler D., Siepel A., Goldman N., Pollard K.S., Pedersen J.S., Lander E.S., Kellis M.
Nature 478:476-482(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Thorbecke.
[3]Ensembl
Submitted (SEP-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Thorbecke Ensembl ENSOCUP00000024191 Ensembl ENSOCUP00000020690.
[4]"The initiation of mammalian protein synthesis and mRNA scanning mechanism."
Lomakin I.B., Steitz T.A.
Nature 500:307-311(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (7.01 ANGSTROMS).

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AAGW02024470 Genomic DNA. No translation available.
AAGW02048509 Genomic DNA. No translation available.
RefSeqXP_002710354.1. XM_002710308.1.
XP_002710355.1. XM_002710309.1.
UniGeneOcu.1603.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
4KZXX-ray7.81O1-151[»]
4KZYX-ray7.01O1-151[»]
4KZZX-ray7.03O1-151[»]
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSOCUT00000028522; ENSOCUP00000020690; ENSOCUG00000025034.
ENSOCUT00000029787; ENSOCUP00000024191; ENSOCUG00000026323.
GeneID100343884.

Phylogenomic databases

GeneTreeENSGT00390000000703.
OrthoDBEOG77DJ81.
TreeFamTF300125.

Family and domain databases

Gene3D3.30.420.80. 1 hit.
HAMAPMF_01310. Ribosomal_S11.
InterProIPR001971. Ribosomal_S11.
IPR018102. Ribosomal_S11_CS.
[Graphical view]
PANTHERPTHR11759. PTHR11759. 1 hit.
PfamPF00411. Ribosomal_S11. 1 hit.
[Graphical view]
PIRSFPIRSF002131. Ribosomal_S11. 1 hit.
PROSITEPS00054. RIBOSOMAL_S11. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameG1U472_RABIT
AccessionPrimary (citable) accession number: G1U472
Entry history
Integrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: May 14, 2014
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)