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G1TZ76

- G1TZ76_RABIT

UniProt

G1TZ76 - G1TZ76_RABIT

Protein

40S ribosomal protein S27

Gene

LOC100356638

Organism
Oryctolagus cuniculus (Rabbit)
Status
Unreviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
  1. Functioni

    Cofactori

    Binds 1 zinc ion per subunit.UniRule annotation

    GO - Molecular functioni

    1. metal ion binding Source: UniProtKB-KW
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal proteinUniRule annotation

    Keywords - Ligandi

    Metal-binding, Zinc

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    40S ribosomal protein S27UniRule annotation
    Gene namesi
    Name:LOC100356638Imported
    OrganismiOryctolagus cuniculus (Rabbit)Imported
    Taxonomic identifieri9986 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresLagomorphaLeporidaeOryctolagus
    ProteomesiUP000001811: Chromosome 1

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    4KZXX-ray7.81b1-84[»]
    4KZYX-ray7.01b1-84[»]
    4KZZX-ray7.03b1-84[»]
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein S27e family.UniRule annotation

    Keywords - Domaini

    Zinc-fingerUniRule annotation

    Phylogenomic databases

    GeneTreeiENSGT00390000013514.
    OMAiCASVLCQ.
    OrthoDBiEOG78SQM9.
    TreeFamiTF300265.

    Family and domain databases

    Gene3Di2.20.25.100. 1 hit.
    HAMAPiMF_00371. Ribosomal_S27e.
    InterProiIPR000592. Ribosomal_S27e.
    IPR023407. Ribosomal_S27e_Zn-bd_dom.
    IPR011332. Ribosomal_zn-bd.
    [Graphical view]
    PANTHERiPTHR11594. PTHR11594. 1 hit.
    PfamiPF01667. Ribosomal_S27e. 1 hit.
    [Graphical view]
    ProDomiPD004466. Ribosomal_S27e. 1 hit.
    [Graphical view] [Entries sharing at least one domain]
    SUPFAMiSSF57829. SSF57829. 1 hit.
    PROSITEiPS01168. RIBOSOMAL_S27E. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    G1TZ76-1 [UniParc]FASTAAdd to Basket

    « Hide

    MPLAKDLLHP SPEEEKRKHK KKRLVQSPNS YFMDVKCPGC YKITTVFSHA   50
    QTVVLCVGCS TVLCQPTGGK ARLTEGCSFR RKQH 84
    Length:84
    Mass (Da):9,461
    Last modified:October 19, 2011 - v1
    Checksum:i242C4466AC8A8900
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AAGW02000499 Genomic DNA. No translation available.
    AAGW02000817 Genomic DNA. No translation available.
    AAGW02025095 Genomic DNA. No translation available.
    AAGW02048517 Genomic DNA. No translation available.
    RefSeqiXP_002708254.1. XM_002708208.2.
    XP_002715522.1. XM_002715476.2.
    XP_002715798.1. XM_002715752.2.
    XP_002718158.1. XM_002718112.2.
    UniGeneiOcu.7306.
    Ocu.8084.
    Ocu.8376.

    Genome annotation databases

    EnsembliENSOCUT00000009733; ENSOCUP00000022234; ENSOCUG00000022442.
    ENSOCUT00000011789; ENSOCUP00000010135; ENSOCUG00000011792.
    ENSOCUT00000023068; ENSOCUP00000022396; ENSOCUG00000025002.
    ENSOCUT00000029745; ENSOCUP00000021064; ENSOCUG00000024168.
    GeneIDi100345044.
    100345694.
    100348261.
    100356638.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AAGW02000499 Genomic DNA. No translation available.
    AAGW02000817 Genomic DNA. No translation available.
    AAGW02025095 Genomic DNA. No translation available.
    AAGW02048517 Genomic DNA. No translation available.
    RefSeqi XP_002708254.1. XM_002708208.2.
    XP_002715522.1. XM_002715476.2.
    XP_002715798.1. XM_002715752.2.
    XP_002718158.1. XM_002718112.2.
    UniGenei Ocu.7306.
    Ocu.8084.
    Ocu.8376.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    4KZX X-ray 7.81 b 1-84 [» ]
    4KZY X-ray 7.01 b 1-84 [» ]
    4KZZ X-ray 7.03 b 1-84 [» ]
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSOCUT00000009733 ; ENSOCUP00000022234 ; ENSOCUG00000022442 .
    ENSOCUT00000011789 ; ENSOCUP00000010135 ; ENSOCUG00000011792 .
    ENSOCUT00000023068 ; ENSOCUP00000022396 ; ENSOCUG00000025002 .
    ENSOCUT00000029745 ; ENSOCUP00000021064 ; ENSOCUG00000024168 .
    GeneIDi 100345044.
    100345694.
    100348261.
    100356638.

    Organism-specific databases

    CTDi 6232.

    Phylogenomic databases

    GeneTreei ENSGT00390000013514.
    OMAi CASVLCQ.
    OrthoDBi EOG78SQM9.
    TreeFami TF300265.

    Family and domain databases

    Gene3Di 2.20.25.100. 1 hit.
    HAMAPi MF_00371. Ribosomal_S27e.
    InterProi IPR000592. Ribosomal_S27e.
    IPR023407. Ribosomal_S27e_Zn-bd_dom.
    IPR011332. Ribosomal_zn-bd.
    [Graphical view ]
    PANTHERi PTHR11594. PTHR11594. 1 hit.
    Pfami PF01667. Ribosomal_S27e. 1 hit.
    [Graphical view ]
    ProDomi PD004466. Ribosomal_S27e. 1 hit.
    [Graphical view ] [Entries sharing at least one domain ]
    SUPFAMi SSF57829. SSF57829. 1 hit.
    PROSITEi PS01168. RIBOSOMAL_S27E. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome Sequence of Oryctolagus cuniculus (European rabbit)."
      The Genome Sequencing Platform
      Di Palma F., Heiman D., Young S., Gnerre S., Johnson J., Lander E.S., Lindblad-Toh K.
      Submitted (AUG-2009) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ThorbeckeImported.
    2. "A high-resolution map of human evolutionary constraint using 29 mammals."
      Lindblad-Toh K., Garber M., Zuk O., Lin M.F., Parker B.J., Washietl S., Kheradpour P., Ernst J., Jordan G., Mauceli E., Ward L.D., Lowe C.B., Holloway A.K., Clamp M., Gnerre S., Alfoldi J., Beal K., Chang J.
      , Clawson H., Cuff J., Di Palma F., Fitzgerald S., Flicek P., Guttman M., Hubisz M.J., Jaffe D.B., Jungreis I., Kent W.J., Kostka D., Lara M., Martins A.L., Massingham T., Moltke I., Raney B.J., Rasmussen M.D., Robinson J., Stark A., Vilella A.J., Wen J., Xie X., Zody M.C., Baldwin J., Bloom T., Chin C.W., Heiman D., Nicol R., Nusbaum C., Young S., Wilkinson J., Worley K.C., Kovar C.L., Muzny D.M., Gibbs R.A., Cree A., Dihn H.H., Fowler G., Jhangiani S., Joshi V., Lee S., Lewis L.R., Nazareth L.V., Okwuonu G., Santibanez J., Warren W.C., Mardis E.R., Weinstock G.M., Wilson R.K., Delehaunty K., Dooling D., Fronik C., Fulton L., Fulton B., Graves T., Minx P., Sodergren E., Birney E., Margulies E.H., Herrero J., Green E.D., Haussler D., Siepel A., Goldman N., Pollard K.S., Pedersen J.S., Lander E.S., Kellis M.
      Nature 478:476-482(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ThorbeckeImported.
    3. Ensembl
      Submitted (SEP-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: ThorbeckeImported.
    4. "The initiation of mammalian protein synthesis and mRNA scanning mechanism."
      Lomakin I.B., Steitz T.A.
      Nature 500:307-311(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (7.01 ANGSTROMS).

    Entry informationi

    Entry nameiG1TZ76_RABIT
    AccessioniPrimary (citable) accession number: G1TZ76
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 19, 2011
    Last sequence update: October 19, 2011
    Last modified: October 1, 2014
    This is version 29 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    3D-structureImported, Complete proteome, Reference proteomeImported

    External Data

    Dasty 3