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G1TZ76 (G1TZ76_RABIT) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 27. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length84 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Cofactor

Binds 1 zinc ion per subunit By similarity. RuleBase RU000671

Sequence similarities

Belongs to the ribosomal protein S27e family. RuleBase RU000671

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSOCUP00000021064 Ensembl ENSOCUP00000022396 Ensembl ENSOCUP00000022234 Ensembl ENSOCUP00000010135

Sequences

Sequence LengthMass (Da)Tools
G1TZ76 [UniParc].

Last modified October 19, 2011. Version 1.
Checksum: 242C4466AC8A8900

FASTA849,461
        10         20         30         40         50         60 
MPLAKDLLHP SPEEEKRKHK KKRLVQSPNS YFMDVKCPGC YKITTVFSHA QTVVLCVGCS 

        70         80 
TVLCQPTGGK ARLTEGCSFR RKQH 

« Hide

References

« Hide 'large scale' references
[1]"Genome Sequence of Oryctolagus cuniculus (European rabbit)."
The Genome Sequencing Platform
Di Palma F., Heiman D., Young S., Gnerre S., Johnson J., Lander E.S., Lindblad-Toh K.
Submitted (AUG-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Thorbecke Ensembl ENSOCUP00000021064 Ensembl ENSOCUP00000022396 Ensembl ENSOCUP00000022234 Ensembl ENSOCUP00000010135.
[2]"A high-resolution map of human evolutionary constraint using 29 mammals."
Lindblad-Toh K., Garber M., Zuk O., Lin M.F., Parker B.J., Washietl S., Kheradpour P., Ernst J., Jordan G., Mauceli E., Ward L.D., Lowe C.B., Holloway A.K., Clamp M., Gnerre S., Alfoldi J., Beal K., Chang J. expand/collapse author list , Clawson H., Cuff J., Di Palma F., Fitzgerald S., Flicek P., Guttman M., Hubisz M.J., Jaffe D.B., Jungreis I., Kent W.J., Kostka D., Lara M., Martins A.L., Massingham T., Moltke I., Raney B.J., Rasmussen M.D., Robinson J., Stark A., Vilella A.J., Wen J., Xie X., Zody M.C., Baldwin J., Bloom T., Chin C.W., Heiman D., Nicol R., Nusbaum C., Young S., Wilkinson J., Worley K.C., Kovar C.L., Muzny D.M., Gibbs R.A., Cree A., Dihn H.H., Fowler G., Jhangiani S., Joshi V., Lee S., Lewis L.R., Nazareth L.V., Okwuonu G., Santibanez J., Warren W.C., Mardis E.R., Weinstock G.M., Wilson R.K., Delehaunty K., Dooling D., Fronik C., Fulton L., Fulton B., Graves T., Minx P., Sodergren E., Birney E., Margulies E.H., Herrero J., Green E.D., Haussler D., Siepel A., Goldman N., Pollard K.S., Pedersen J.S., Lander E.S., Kellis M.
Nature 478:476-482(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Thorbecke.
[3]Ensembl
Submitted (SEP-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Thorbecke Ensembl ENSOCUP00000021064 Ensembl ENSOCUP00000022396 Ensembl ENSOCUP00000022234 Ensembl ENSOCUP00000010135.
[4]"The initiation of mammalian protein synthesis and mRNA scanning mechanism."
Lomakin I.B., Steitz T.A.
Nature 500:307-311(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (7.01 ANGSTROMS).

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AAGW02000499 Genomic DNA. No translation available.
AAGW02000817 Genomic DNA. No translation available.
AAGW02025095 Genomic DNA. No translation available.
AAGW02048517 Genomic DNA. No translation available.
RefSeqXP_002708254.1. XM_002708208.1.
XP_002715522.1. XM_002715476.1.
XP_002715798.1. XM_002715752.1.
XP_002718158.1. XM_002718112.1.
UniGeneOcu.7306.
Ocu.8084.
Ocu.8376.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
4KZXX-ray7.81b1-84[»]
4KZYX-ray7.01b1-84[»]
4KZZX-ray7.03b1-84[»]
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSOCUT00000009733; ENSOCUP00000022234; ENSOCUG00000022442.
ENSOCUT00000011789; ENSOCUP00000010135; ENSOCUG00000011792.
ENSOCUT00000023068; ENSOCUP00000022396; ENSOCUG00000025002.
ENSOCUT00000029745; ENSOCUP00000021064; ENSOCUG00000024168.
GeneID100345044.
100345694.
100348261.
100356638.

Phylogenomic databases

GeneTreeENSGT00390000013514.
OMACASVLCQ.
OrthoDBEOG78SQM9.
TreeFamTF300265.

Family and domain databases

Gene3D2.20.25.100. 1 hit.
HAMAPMF_00371. Ribosomal_S27e.
InterProIPR000592. Ribosomal_S27e.
IPR023407. Ribosomal_S27e_Zn-bd_dom.
IPR011332. Ribosomal_zn-bd.
[Graphical view]
PANTHERPTHR11594. PTHR11594. 1 hit.
PfamPF01667. Ribosomal_S27e. 1 hit.
[Graphical view]
ProDomPD004466. Ribosomal_S27e. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMSSF57829. SSF57829. 1 hit.
PROSITEPS01168. RIBOSOMAL_S27E. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameG1TZ76_RABIT
AccessionPrimary (citable) accession number: G1TZ76
Entry history
Integrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: April 16, 2014
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)