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G1TZ76

- G1TZ76_RABIT

UniProt

G1TZ76 - G1TZ76_RABIT

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Protein

40S ribosomal protein S27

Gene

LOC100356638

Organism
Oryctolagus cuniculus (Rabbit)
Status
Unreviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli

Functioni

Cofactori

Binds 1 zinc ion per subunit.UniRule annotation

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal proteinUniRule annotation

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S27UniRule annotation
Gene namesi
Name:LOC100356638Imported
OrganismiOryctolagus cuniculus (Rabbit)Imported
Taxonomic identifieri9986 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresLagomorphaLeporidaeOryctolagus
ProteomesiUP000001811: Chromosome 1, UP000001811: Chromosome 13, UP000001811: Chromosome 17

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

Structurei

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4KZXX-ray7.81b1-84[»]
4KZYX-ray7.01b1-84[»]
4KZZX-ray7.03b1-84[»]
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S27e family.UniRule annotation

Keywords - Domaini

Zinc-fingerUniRule annotation

Phylogenomic databases

GeneTreeiENSGT00390000013514.
OMAiCASVLCQ.
OrthoDBiEOG78SQM9.
TreeFamiTF300265.

Family and domain databases

Gene3Di2.20.25.100. 1 hit.
HAMAPiMF_00371. Ribosomal_S27e.
InterProiIPR000592. Ribosomal_S27e.
IPR023407. Ribosomal_S27e_Zn-bd_dom.
IPR011332. Ribosomal_zn-bd.
[Graphical view]
PANTHERiPTHR11594. PTHR11594. 1 hit.
PfamiPF01667. Ribosomal_S27e. 1 hit.
[Graphical view]
ProDomiPD004466. Ribosomal_S27e. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF57829. SSF57829. 1 hit.
PROSITEiPS01168. RIBOSOMAL_S27E. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G1TZ76-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MPLAKDLLHP SPEEEKRKHK KKRLVQSPNS YFMDVKCPGC YKITTVFSHA
60 70 80
QTVVLCVGCS TVLCQPTGGK ARLTEGCSFR RKQH
Length:84
Mass (Da):9,461
Last modified:October 19, 2011 - v1
Checksum:i242C4466AC8A8900
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AAGW02000499 Genomic DNA. No translation available.
AAGW02000817 Genomic DNA. No translation available.
AAGW02025095 Genomic DNA. No translation available.
AAGW02048517 Genomic DNA. No translation available.
RefSeqiXP_002708254.1. XM_002708208.2.
XP_002715522.1. XM_002715476.2.
XP_002715798.1. XM_002715752.2.
XP_002718158.1. XM_002718112.2.

Genome annotation databases

EnsembliENSOCUT00000009733; ENSOCUP00000022234; ENSOCUG00000022442.
ENSOCUT00000011789; ENSOCUP00000010135; ENSOCUG00000011792.
ENSOCUT00000023068; ENSOCUP00000022396; ENSOCUG00000025002.
ENSOCUT00000029745; ENSOCUP00000021064; ENSOCUG00000024168.
GeneIDi100345044.
100345694.
100348261.
100356638.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AAGW02000499 Genomic DNA. No translation available.
AAGW02000817 Genomic DNA. No translation available.
AAGW02025095 Genomic DNA. No translation available.
AAGW02048517 Genomic DNA. No translation available.
RefSeqi XP_002708254.1. XM_002708208.2.
XP_002715522.1. XM_002715476.2.
XP_002715798.1. XM_002715752.2.
XP_002718158.1. XM_002718112.2.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
4KZX X-ray 7.81 b 1-84 [» ]
4KZY X-ray 7.01 b 1-84 [» ]
4KZZ X-ray 7.03 b 1-84 [» ]
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSOCUT00000009733 ; ENSOCUP00000022234 ; ENSOCUG00000022442 .
ENSOCUT00000011789 ; ENSOCUP00000010135 ; ENSOCUG00000011792 .
ENSOCUT00000023068 ; ENSOCUP00000022396 ; ENSOCUG00000025002 .
ENSOCUT00000029745 ; ENSOCUP00000021064 ; ENSOCUG00000024168 .
GeneIDi 100345044.
100345694.
100348261.
100356638.

Organism-specific databases

CTDi 6232.

Phylogenomic databases

GeneTreei ENSGT00390000013514.
OMAi CASVLCQ.
OrthoDBi EOG78SQM9.
TreeFami TF300265.

Family and domain databases

Gene3Di 2.20.25.100. 1 hit.
HAMAPi MF_00371. Ribosomal_S27e.
InterProi IPR000592. Ribosomal_S27e.
IPR023407. Ribosomal_S27e_Zn-bd_dom.
IPR011332. Ribosomal_zn-bd.
[Graphical view ]
PANTHERi PTHR11594. PTHR11594. 1 hit.
Pfami PF01667. Ribosomal_S27e. 1 hit.
[Graphical view ]
ProDomi PD004466. Ribosomal_S27e. 1 hit.
[Graphical view ] [Entries sharing at least one domain ]
SUPFAMi SSF57829. SSF57829. 1 hit.
PROSITEi PS01168. RIBOSOMAL_S27E. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Genome Sequence of Oryctolagus cuniculus (European rabbit)."
    The Genome Sequencing Platform
    Di Palma F., Heiman D., Young S., Gnerre S., Johnson J., Lander E.S., Lindblad-Toh K.
    Submitted (AUG-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ThorbeckeImported.
  2. "A high-resolution map of human evolutionary constraint using 29 mammals."
    Lindblad-Toh K., Garber M., Zuk O., Lin M.F., Parker B.J., Washietl S., Kheradpour P., Ernst J., Jordan G., Mauceli E., Ward L.D., Lowe C.B., Holloway A.K., Clamp M., Gnerre S., Alfoldi J., Beal K., Chang J.
    , Clawson H., Cuff J., Di Palma F., Fitzgerald S., Flicek P., Guttman M., Hubisz M.J., Jaffe D.B., Jungreis I., Kent W.J., Kostka D., Lara M., Martins A.L., Massingham T., Moltke I., Raney B.J., Rasmussen M.D., Robinson J., Stark A., Vilella A.J., Wen J., Xie X., Zody M.C., Baldwin J., Bloom T., Chin C.W., Heiman D., Nicol R., Nusbaum C., Young S., Wilkinson J., Worley K.C., Kovar C.L., Muzny D.M., Gibbs R.A., Cree A., Dihn H.H., Fowler G., Jhangiani S., Joshi V., Lee S., Lewis L.R., Nazareth L.V., Okwuonu G., Santibanez J., Warren W.C., Mardis E.R., Weinstock G.M., Wilson R.K., Delehaunty K., Dooling D., Fronik C., Fulton L., Fulton B., Graves T., Minx P., Sodergren E., Birney E., Margulies E.H., Herrero J., Green E.D., Haussler D., Siepel A., Goldman N., Pollard K.S., Pedersen J.S., Lander E.S., Kellis M.
    Nature 478:476-482(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ThorbeckeImported.
  3. Ensembl
    Submitted (SEP-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: ThorbeckeImported.
  4. "The initiation of mammalian protein synthesis and mRNA scanning mechanism."
    Lomakin I.B., Steitz T.A.
    Nature 500:307-311(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (7.01 ANGSTROMS).

Entry informationi

Entry nameiG1TZ76_RABIT
AccessioniPrimary (citable) accession number: G1TZ76
Entry historyi
Integrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: October 29, 2014
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

3D-structureImported, Complete proteome, Reference proteomeImported

External Data

Dasty 3