Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

G1TU13

- G1TU13_RABIT

UniProt

G1TU13 - G1TU13_RABIT

Protein
Submitted name:

Uncharacterized protein

Gene

LOC100359176

Organism
Oryctolagus cuniculus (Rabbit)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
  1. Functioni

    GO - Molecular functioni

    1. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Uncharacterized proteinImported
    Gene namesi
    Name:LOC100359176Imported
    OrganismiOryctolagus cuniculus (Rabbit)Imported
    Taxonomic identifieri9986 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresLagomorphaLeporidaeOryctolagus
    ProteomesiUP000001811: Chromosome 10

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: InterPro

    PTM / Processingi

    Proteomic databases

    PRIDEiG1TU13.

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    4KZXX-ray7.81R1-135[»]
    4KZYX-ray7.01R1-135[»]
    4KZZX-ray7.03R1-135[»]
    ProteinModelPortaliG1TU13.
    SMRiG1TU13. Positions 1-126.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00390000006548.
    OMAiHETTENI.
    OrthoDBiEOG72C52C.
    TreeFamiTF317992.

    Family and domain databases

    Gene3Di1.10.60.20. 1 hit.
    HAMAPiMF_00511. Ribosomal_S17e.
    InterProiIPR001210. Ribosomal_S17e.
    IPR018273. Ribosomal_S17e_CS.
    [Graphical view]
    PANTHERiPTHR10732. PTHR10732. 1 hit.
    PfamiPF00833. Ribosomal_S17e. 1 hit.
    [Graphical view]
    SUPFAMiSSF116820. SSF116820. 1 hit.
    PROSITEiPS00712. RIBOSOMAL_S17E. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    G1TU13-1 [UniParc]FASTAAdd to Basket

    « Hide

    MGRVRTKTVK KAARVIIEKY YTRLGNDFHT NKRVCEEIAI IPSKKLRNKI    50
    AGYVTHLMKR IQRGPVRGIS IKLQEEERER RDNYVPEVSA LDQEIIEVDP 100
    DTKEMLKLLD FGSLSNLQVT QPTVGMNFKT PRGAV 135
    Length:135
    Mass (Da):15,524
    Last modified:October 19, 2011 - v1
    Checksum:i29806605C5401325
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AAGW02061996 Genomic DNA. No translation available.
    RefSeqiXP_002713874.1. XM_002713828.2.
    XP_002721523.1. XM_002721477.2.
    UniGeneiOcu.3413.
    Ocu.8135.

    Genome annotation databases

    EnsembliENSOCUT00000005303; ENSOCUP00000020536; ENSOCUG00000005304.
    GeneIDi100353606.
    100359176.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AAGW02061996 Genomic DNA. No translation available.
    RefSeqi XP_002713874.1. XM_002713828.2.
    XP_002721523.1. XM_002721477.2.
    UniGenei Ocu.3413.
    Ocu.8135.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    4KZX X-ray 7.81 R 1-135 [» ]
    4KZY X-ray 7.01 R 1-135 [» ]
    4KZZ X-ray 7.03 R 1-135 [» ]
    ProteinModelPortali G1TU13.
    SMRi G1TU13. Positions 1-126.
    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PRIDEi G1TU13.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSOCUT00000005303 ; ENSOCUP00000020536 ; ENSOCUG00000005304 .
    GeneIDi 100353606.
    100359176.

    Organism-specific databases

    CTDi 6218.

    Phylogenomic databases

    GeneTreei ENSGT00390000006548.
    OMAi HETTENI.
    OrthoDBi EOG72C52C.
    TreeFami TF317992.

    Family and domain databases

    Gene3Di 1.10.60.20. 1 hit.
    HAMAPi MF_00511. Ribosomal_S17e.
    InterProi IPR001210. Ribosomal_S17e.
    IPR018273. Ribosomal_S17e_CS.
    [Graphical view ]
    PANTHERi PTHR10732. PTHR10732. 1 hit.
    Pfami PF00833. Ribosomal_S17e. 1 hit.
    [Graphical view ]
    SUPFAMi SSF116820. SSF116820. 1 hit.
    PROSITEi PS00712. RIBOSOMAL_S17E. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome Sequence of Oryctolagus cuniculus (European rabbit)."
      The Genome Sequencing Platform
      Di Palma F., Heiman D., Young S., Gnerre S., Johnson J., Lander E.S., Lindblad-Toh K.
      Submitted (AUG-2009) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ThorbeckeImported.
    2. "A high-resolution map of human evolutionary constraint using 29 mammals."
      Lindblad-Toh K., Garber M., Zuk O., Lin M.F., Parker B.J., Washietl S., Kheradpour P., Ernst J., Jordan G., Mauceli E., Ward L.D., Lowe C.B., Holloway A.K., Clamp M., Gnerre S., Alfoldi J., Beal K., Chang J.
      , Clawson H., Cuff J., Di Palma F., Fitzgerald S., Flicek P., Guttman M., Hubisz M.J., Jaffe D.B., Jungreis I., Kent W.J., Kostka D., Lara M., Martins A.L., Massingham T., Moltke I., Raney B.J., Rasmussen M.D., Robinson J., Stark A., Vilella A.J., Wen J., Xie X., Zody M.C., Baldwin J., Bloom T., Chin C.W., Heiman D., Nicol R., Nusbaum C., Young S., Wilkinson J., Worley K.C., Kovar C.L., Muzny D.M., Gibbs R.A., Cree A., Dihn H.H., Fowler G., Jhangiani S., Joshi V., Lee S., Lewis L.R., Nazareth L.V., Okwuonu G., Santibanez J., Warren W.C., Mardis E.R., Weinstock G.M., Wilson R.K., Delehaunty K., Dooling D., Fronik C., Fulton L., Fulton B., Graves T., Minx P., Sodergren E., Birney E., Margulies E.H., Herrero J., Green E.D., Haussler D., Siepel A., Goldman N., Pollard K.S., Pedersen J.S., Lander E.S., Kellis M.
      Nature 478:476-482(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ThorbeckeImported.
    3. Ensembl
      Submitted (SEP-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: ThorbeckeImported.
    4. "The initiation of mammalian protein synthesis and mRNA scanning mechanism."
      Lomakin I.B., Steitz T.A.
      Nature 500:307-311(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (7.01 ANGSTROMS).

    Entry informationi

    Entry nameiG1TU13_RABIT
    AccessioniPrimary (citable) accession number: G1TU13
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 19, 2011
    Last sequence update: October 19, 2011
    Last modified: October 1, 2014
    This is version 22 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    3D-structureImported, Complete proteome, Reference proteomeImported

    External Data

    Dasty 3