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G1TS40

- G1TS40_RABIT

UniProt

G1TS40 - G1TS40_RABIT

Protein

40S ribosomal protein S24

Gene

LOC100338405

Organism
Oryctolagus cuniculus (Rabbit)
Status
Unreviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
  1. Functioni

    GO - Molecular functioni

    1. nucleotide binding Source: InterPro
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal proteinUniRule annotation

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    40S ribosomal protein S24UniRule annotation
    Gene namesi
    Name:LOC100338405Imported
    OrganismiOryctolagus cuniculus (Rabbit)Imported
    Taxonomic identifieri9986 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresLagomorphaLeporidaeOryctolagus
    ProteomesiUP000001811: Chromosome 10

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    4KZXX-ray7.81Y1-133[»]
    4KZYX-ray7.01Y1-133[»]
    4KZZX-ray7.03Y1-133[»]
    ProteinModelPortaliG1TS40.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein S24e family.UniRule annotation

    Phylogenomic databases

    GeneTreeiENSGT00390000000153.
    OMAiMEAPESS.
    OrthoDBiEOG7PS1J8.
    TreeFamiTF314134.

    Family and domain databases

    Gene3Di3.30.70.330. 1 hit.
    HAMAPiMF_00545. Ribosomal_S24e.
    InterProiIPR012677. Nucleotide-bd_a/b_plait.
    IPR012678. Ribosomal_L23/L15e_core_dom.
    IPR001976. Ribosomal_S24e.
    IPR018098. Ribosomal_S24e_CS.
    [Graphical view]
    PANTHERiPTHR10496. PTHR10496. 1 hit.
    PfamiPF01282. Ribosomal_S24e. 1 hit.
    [Graphical view]
    ProDomiPD006052. Ribosomal_S24e. 1 hit.
    [Graphical view] [Entries sharing at least one domain]
    SUPFAMiSSF54189. SSF54189. 1 hit.
    PROSITEiPS00529. RIBOSOMAL_S24E. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    G1TS40-1 [UniParc]FASTAAdd to Basket

    « Hide

    MNDTVTIRTR KFMTNRLLQR KQMVIDVLHP GKATVPKTEI QEKLAKMYKT    50
    TPDVIFVFGF RTHFGGGKTT GFGMIYDSLD YAKKNEPKHR LARHGLYEKK 100
    KTSRKQRKER KNRMKKVRGT AKANVGAGKK PKE 133
    Length:133
    Mass (Da):15,395
    Last modified:October 19, 2011 - v1
    Checksum:iE1429A10757E6396
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AAGW02035474 Genomic DNA. No translation available.
    UniGeneiOcu.1172.

    Genome annotation databases

    EnsembliENSOCUT00000029568; ENSOCUP00000019851; ENSOCUG00000025551.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AAGW02035474 Genomic DNA. No translation available.
    UniGenei Ocu.1172.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    4KZX X-ray 7.81 Y 1-133 [» ]
    4KZY X-ray 7.01 Y 1-133 [» ]
    4KZZ X-ray 7.03 Y 1-133 [» ]
    ProteinModelPortali G1TS40.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSOCUT00000029568 ; ENSOCUP00000019851 ; ENSOCUG00000025551 .

    Phylogenomic databases

    GeneTreei ENSGT00390000000153.
    OMAi MEAPESS.
    OrthoDBi EOG7PS1J8.
    TreeFami TF314134.

    Family and domain databases

    Gene3Di 3.30.70.330. 1 hit.
    HAMAPi MF_00545. Ribosomal_S24e.
    InterProi IPR012677. Nucleotide-bd_a/b_plait.
    IPR012678. Ribosomal_L23/L15e_core_dom.
    IPR001976. Ribosomal_S24e.
    IPR018098. Ribosomal_S24e_CS.
    [Graphical view ]
    PANTHERi PTHR10496. PTHR10496. 1 hit.
    Pfami PF01282. Ribosomal_S24e. 1 hit.
    [Graphical view ]
    ProDomi PD006052. Ribosomal_S24e. 1 hit.
    [Graphical view ] [Entries sharing at least one domain ]
    SUPFAMi SSF54189. SSF54189. 1 hit.
    PROSITEi PS00529. RIBOSOMAL_S24E. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome Sequence of Oryctolagus cuniculus (European rabbit)."
      The Genome Sequencing Platform
      Di Palma F., Heiman D., Young S., Gnerre S., Johnson J., Lander E.S., Lindblad-Toh K.
      Submitted (AUG-2009) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ThorbeckeImported.
    2. "A high-resolution map of human evolutionary constraint using 29 mammals."
      Lindblad-Toh K., Garber M., Zuk O., Lin M.F., Parker B.J., Washietl S., Kheradpour P., Ernst J., Jordan G., Mauceli E., Ward L.D., Lowe C.B., Holloway A.K., Clamp M., Gnerre S., Alfoldi J., Beal K., Chang J.
      , Clawson H., Cuff J., Di Palma F., Fitzgerald S., Flicek P., Guttman M., Hubisz M.J., Jaffe D.B., Jungreis I., Kent W.J., Kostka D., Lara M., Martins A.L., Massingham T., Moltke I., Raney B.J., Rasmussen M.D., Robinson J., Stark A., Vilella A.J., Wen J., Xie X., Zody M.C., Baldwin J., Bloom T., Chin C.W., Heiman D., Nicol R., Nusbaum C., Young S., Wilkinson J., Worley K.C., Kovar C.L., Muzny D.M., Gibbs R.A., Cree A., Dihn H.H., Fowler G., Jhangiani S., Joshi V., Lee S., Lewis L.R., Nazareth L.V., Okwuonu G., Santibanez J., Warren W.C., Mardis E.R., Weinstock G.M., Wilson R.K., Delehaunty K., Dooling D., Fronik C., Fulton L., Fulton B., Graves T., Minx P., Sodergren E., Birney E., Margulies E.H., Herrero J., Green E.D., Haussler D., Siepel A., Goldman N., Pollard K.S., Pedersen J.S., Lander E.S., Kellis M.
      Nature 478:476-482(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ThorbeckeImported.
    3. Ensembl
      Submitted (SEP-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: ThorbeckeImported.
    4. "The initiation of mammalian protein synthesis and mRNA scanning mechanism."
      Lomakin I.B., Steitz T.A.
      Nature 500:307-311(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (7.01 ANGSTROMS).

    Entry informationi

    Entry nameiG1TS40_RABIT
    AccessioniPrimary (citable) accession number: G1TS40
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 19, 2011
    Last sequence update: October 19, 2011
    Last modified: October 1, 2014
    This is version 21 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    3D-structureImported, Complete proteome, Reference proteomeImported

    External Data

    Dasty 3