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G1TS40

- G1TS40_RABIT

UniProt

G1TS40 - G1TS40_RABIT

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Protein

40S ribosomal protein S24

Gene
LOC100338405
Organism
Oryctolagus cuniculus (Rabbit)
Status
Unreviewed - Annotation score: 2 out of 5 - Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. nucleotide binding Source: InterPro
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal proteinUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S24UniRule annotation
Gene namesi
Name:LOC100338405Imported
OrganismiOryctolagus cuniculus (Rabbit)Imported
Taxonomic identifieri9986 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresLagomorphaLeporidaeOryctolagus
ProteomesiUP000001811: Chromosome 10

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

Structurei

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4KZXX-ray7.81Y1-133[»]
4KZYX-ray7.01Y1-133[»]
4KZZX-ray7.03Y1-133[»]
ProteinModelPortaliG1TS40.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S24e family.UniRule annotation

Phylogenomic databases

GeneTreeiENSGT00390000000153.
OMAiMEAPESS.
OrthoDBiEOG7PS1J8.
TreeFamiTF314134.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
HAMAPiMF_00545. Ribosomal_S24e.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR012678. Ribosomal_L23/L15e_core_dom.
IPR001976. Ribosomal_S24e.
IPR018098. Ribosomal_S24e_CS.
[Graphical view]
PANTHERiPTHR10496. PTHR10496. 1 hit.
PfamiPF01282. Ribosomal_S24e. 1 hit.
[Graphical view]
ProDomiPD006052. Ribosomal_S24e. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF54189. SSF54189. 1 hit.
PROSITEiPS00529. RIBOSOMAL_S24E. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G1TS40-1 [UniParc]FASTAAdd to Basket

« Hide

MNDTVTIRTR KFMTNRLLQR KQMVIDVLHP GKATVPKTEI QEKLAKMYKT    50
TPDVIFVFGF RTHFGGGKTT GFGMIYDSLD YAKKNEPKHR LARHGLYEKK 100
KTSRKQRKER KNRMKKVRGT AKANVGAGKK PKE 133
Length:133
Mass (Da):15,395
Last modified:October 19, 2011 - v1
Checksum:iE1429A10757E6396
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AAGW02035474 Genomic DNA. No translation available.
UniGeneiOcu.1172.

Genome annotation databases

EnsembliENSOCUT00000029568; ENSOCUP00000019851; ENSOCUG00000025551.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AAGW02035474 Genomic DNA. No translation available.
UniGenei Ocu.1172.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
4KZX X-ray 7.81 Y 1-133 [» ]
4KZY X-ray 7.01 Y 1-133 [» ]
4KZZ X-ray 7.03 Y 1-133 [» ]
ProteinModelPortali G1TS40.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSOCUT00000029568 ; ENSOCUP00000019851 ; ENSOCUG00000025551 .

Phylogenomic databases

GeneTreei ENSGT00390000000153.
OMAi MEAPESS.
OrthoDBi EOG7PS1J8.
TreeFami TF314134.

Family and domain databases

Gene3Di 3.30.70.330. 1 hit.
HAMAPi MF_00545. Ribosomal_S24e.
InterProi IPR012677. Nucleotide-bd_a/b_plait.
IPR012678. Ribosomal_L23/L15e_core_dom.
IPR001976. Ribosomal_S24e.
IPR018098. Ribosomal_S24e_CS.
[Graphical view ]
PANTHERi PTHR10496. PTHR10496. 1 hit.
Pfami PF01282. Ribosomal_S24e. 1 hit.
[Graphical view ]
ProDomi PD006052. Ribosomal_S24e. 1 hit.
[Graphical view ] [Entries sharing at least one domain ]
SUPFAMi SSF54189. SSF54189. 1 hit.
PROSITEi PS00529. RIBOSOMAL_S24E. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Genome Sequence of Oryctolagus cuniculus (European rabbit)."
    The Genome Sequencing Platform
    Di Palma F., Heiman D., Young S., Gnerre S., Johnson J., Lander E.S., Lindblad-Toh K.
    Submitted (AUG-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ThorbeckeImported.
  2. "A high-resolution map of human evolutionary constraint using 29 mammals."
    Lindblad-Toh K., Garber M., Zuk O., Lin M.F., Parker B.J., Washietl S., Kheradpour P., Ernst J., Jordan G., Mauceli E., Ward L.D., Lowe C.B., Holloway A.K., Clamp M., Gnerre S., Alfoldi J., Beal K., Chang J.
    , Clawson H., Cuff J., Di Palma F., Fitzgerald S., Flicek P., Guttman M., Hubisz M.J., Jaffe D.B., Jungreis I., Kent W.J., Kostka D., Lara M., Martins A.L., Massingham T., Moltke I., Raney B.J., Rasmussen M.D., Robinson J., Stark A., Vilella A.J., Wen J., Xie X., Zody M.C., Baldwin J., Bloom T., Chin C.W., Heiman D., Nicol R., Nusbaum C., Young S., Wilkinson J., Worley K.C., Kovar C.L., Muzny D.M., Gibbs R.A., Cree A., Dihn H.H., Fowler G., Jhangiani S., Joshi V., Lee S., Lewis L.R., Nazareth L.V., Okwuonu G., Santibanez J., Warren W.C., Mardis E.R., Weinstock G.M., Wilson R.K., Delehaunty K., Dooling D., Fronik C., Fulton L., Fulton B., Graves T., Minx P., Sodergren E., Birney E., Margulies E.H., Herrero J., Green E.D., Haussler D., Siepel A., Goldman N., Pollard K.S., Pedersen J.S., Lander E.S., Kellis M.
    Nature 478:476-482(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Thorbecke.
  3. Ensembl
    Submitted (SEP-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: ThorbeckeImported.
  4. "The initiation of mammalian protein synthesis and mRNA scanning mechanism."
    Lomakin I.B., Steitz T.A.
    Nature 500:307-311(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (7.01 ANGSTROMS).

Entry informationi

Entry nameiG1TS40_RABIT
AccessioniPrimary (citable) accession number: G1TS40
Entry historyi
Integrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: September 3, 2014
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

3D-structureImported, Complete proteome, Reference proteome

External Data

Dasty 3

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