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Protein
Submitted name:

Uncharacterized protein

Gene

LOC100347468

Organism
Oryctolagus cuniculus (Rabbit)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal proteinUniRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:LOC100347468Imported
OrganismiOryctolagus cuniculus (Rabbit)Imported
Taxonomic identifieri9986 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresLagomorphaLeporidaeOryctolagus
Proteomesi
  • UP000001811 Componenti: Chromosome 2

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi9986.ENSOCUP00000019681.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3JAGelectron microscopy3.65LL2-153[»]
3JAHelectron microscopy3.45LL2-153[»]
3JAIelectron microscopy3.65LL2-153[»]
4D5Lelectron microscopy9.00L1-158[»]
4D61electron microscopy9.00L1-158[»]
4KZXX-ray7.81L1-158[»]
4KZYX-ray7.01L1-158[»]
4KZZX-ray7.03L1-158[»]
5K0Yelectron microscopy5.80G1-158[»]
ProteinModelPortaliG1TRM4.
SMRiG1TRM4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini5 – 73Ribosomal_S17_NInterPro annotationAdd BLAST69

Sequence similaritiesi

Belongs to the ribosomal protein S17P family.UniRule annotation

Phylogenomic databases

eggNOGiKOG1728. Eukaryota.
COG0186. LUCA.
GeneTreeiENSGT00390000002732.
InParanoidiG1TRM4.
KOiK02949.
OMAiVIIRREY.
OrthoDBiEOG091G0QVV.
TreeFamiTF300126.

Family and domain databases

HAMAPiMF_01345_B. Ribosomal_S17_B. 1 hit.
InterProiIPR012340. NA-bd_OB-fold.
IPR032440. Ribosomal_S11_N.
IPR000266. Ribosomal_S17/S11.
IPR028333. Ribosomal_S17_arc-typ.
IPR019979. Ribosomal_S17_CS.
[Graphical view]
PANTHERiPTHR10744. PTHR10744. 1 hit.
PfamiPF00366. Ribosomal_S17. 1 hit.
PF16205. Ribosomal_S17_N. 1 hit.
[Graphical view]
PRINTSiPR00973. RIBOSOMALS17.
ProDomiPD001295. Ribosomal_S17. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR03630. uS17_arch. 1 hit.
PROSITEiPS00056. RIBOSOMAL_S17. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G1TRM4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MADIQTERAY QKQPTIFQNK KRVLLGETGK EKLPRYYKNI GLGFKTPKEA
60 70 80 90 100
IEGTYIDKKC PFTGNVSIRG RILSGVVTKM KMQRTIVIRR DYLHYIRKYN
110 120 130 140 150
RFEKRHKNMS VHLSPCFRDV QIGDIVTVGE CRPLSKTVRF NVLKVTKAAG

TKKQFQKF
Length:158
Mass (Da):18,431
Last modified:October 19, 2011 - v1
Checksum:i9FB75DC1D99614B0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAGW02006416 Genomic DNA. No translation available.
RefSeqiXP_002709911.1. XM_002709865.2.
XP_002709974.1. XM_002709928.3.

Genome annotation databases

EnsembliENSOCUT00000026363; ENSOCUP00000019681; ENSOCUG00000027435.
GeneIDi100343123.
100347468.
KEGGiocu:100343123.
ocu:100347468.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAGW02006416 Genomic DNA. No translation available.
RefSeqiXP_002709911.1. XM_002709865.2.
XP_002709974.1. XM_002709928.3.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3JAGelectron microscopy3.65LL2-153[»]
3JAHelectron microscopy3.45LL2-153[»]
3JAIelectron microscopy3.65LL2-153[»]
4D5Lelectron microscopy9.00L1-158[»]
4D61electron microscopy9.00L1-158[»]
4KZXX-ray7.81L1-158[»]
4KZYX-ray7.01L1-158[»]
4KZZX-ray7.03L1-158[»]
5K0Yelectron microscopy5.80G1-158[»]
ProteinModelPortaliG1TRM4.
SMRiG1TRM4.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9986.ENSOCUP00000019681.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSOCUT00000026363; ENSOCUP00000019681; ENSOCUG00000027435.
GeneIDi100343123.
100347468.
KEGGiocu:100343123.
ocu:100347468.

Phylogenomic databases

eggNOGiKOG1728. Eukaryota.
COG0186. LUCA.
GeneTreeiENSGT00390000002732.
InParanoidiG1TRM4.
KOiK02949.
OMAiVIIRREY.
OrthoDBiEOG091G0QVV.
TreeFamiTF300126.

Family and domain databases

HAMAPiMF_01345_B. Ribosomal_S17_B. 1 hit.
InterProiIPR012340. NA-bd_OB-fold.
IPR032440. Ribosomal_S11_N.
IPR000266. Ribosomal_S17/S11.
IPR028333. Ribosomal_S17_arc-typ.
IPR019979. Ribosomal_S17_CS.
[Graphical view]
PANTHERiPTHR10744. PTHR10744. 1 hit.
PfamiPF00366. Ribosomal_S17. 1 hit.
PF16205. Ribosomal_S17_N. 1 hit.
[Graphical view]
PRINTSiPR00973. RIBOSOMALS17.
ProDomiPD001295. Ribosomal_S17. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR03630. uS17_arch. 1 hit.
PROSITEiPS00056. RIBOSOMAL_S17. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiG1TRM4_RABIT
AccessioniPrimary (citable) accession number: G1TRM4
Entry historyi
Integrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: November 30, 2016
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.