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G1TPG3

- G1TPG3_RABIT

UniProt

G1TPG3 - G1TPG3_RABIT

Protein
Submitted name:

Uncharacterized protein

Gene

RPS18

Organism
Oryctolagus cuniculus (Rabbit)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
  1. Functioni

    GO - Molecular functioni

    1. RNA binding Source: InterPro
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal proteinUniRule annotation

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Uncharacterized proteinImported
    Gene namesi
    Name:RPS18Imported
    OrganismiOryctolagus cuniculus (Rabbit)Imported
    Taxonomic identifieri9986 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresLagomorphaLeporidaeOryctolagus
    ProteomesiUP000001811: Unplaced

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Proteomic databases

    PRIDEiG1TPG3.

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    4KZXX-ray7.81S1-152[»]
    4KZYX-ray7.01S1-152[»]
    4KZZX-ray7.03S1-152[»]
    ProteinModelPortaliG1TPG3.
    SMRiG1TPG3. Positions 6-142.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein S13P family.UniRule annotation

    Phylogenomic databases

    GeneTreeiENSGT00390000012691.
    OMAiQHILRVM.
    OrthoDBiEOG7Q5HG2.
    TreeFamiTF317649.

    Family and domain databases

    Gene3Di4.10.910.10. 1 hit.
    HAMAPiMF_01315. Ribosomal_S13_S18.
    InterProiIPR027437. 30s_Rbsml_prot_S13_C.
    IPR001892. Ribosomal_S13.
    IPR010979. Ribosomal_S13-like_H2TH.
    IPR018269. Ribosomal_S13_CS.
    [Graphical view]
    PfamiPF00416. Ribosomal_S13. 1 hit.
    [Graphical view]
    PIRSFiPIRSF002134. Ribosomal_S13. 1 hit.
    SUPFAMiSSF46946. SSF46946. 1 hit.
    PROSITEiPS00646. RIBOSOMAL_S13_1. 1 hit.
    PS50159. RIBOSOMAL_S13_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    G1TPG3-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSLVIPEKFQ HILRVLNTNI DGRRKIAFAI TAIKGVGRRY AHVVLRKADI    50
    DLTKRAGELT EDEVERVITI MQNPRQYKIP DWFLNRQKDV KDGKYSQVLA 100
    NGLDNKLRED LERLKKIRAH RGLRHFWGLR VRGQHTKTTG RRGRTVGVSK 150
    KK 152
    Length:152
    Mass (Da):17,719
    Last modified:October 19, 2011 - v1
    Checksum:i4DAF0662C3F37F22
    GO

    Sequence databases

    RefSeqiXP_002714578.1. XM_002714532.2.
    XP_002720764.1. XM_002720718.2.
    UniGeneiOcu.8108.
    Ocu.8310.

    Genome annotation databases

    EnsembliENSOCUT00000014693; ENSOCUP00000018898; ENSOCUG00000014699.
    GeneIDi100349921.
    100356144.

    Cross-referencesi

    Sequence databases

    RefSeqi XP_002714578.1. XM_002714532.2.
    XP_002720764.1. XM_002720718.2.
    UniGenei Ocu.8108.
    Ocu.8310.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    4KZX X-ray 7.81 S 1-152 [» ]
    4KZY X-ray 7.01 S 1-152 [» ]
    4KZZ X-ray 7.03 S 1-152 [» ]
    ProteinModelPortali G1TPG3.
    SMRi G1TPG3. Positions 6-142.
    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PRIDEi G1TPG3.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSOCUT00000014693 ; ENSOCUP00000018898 ; ENSOCUG00000014699 .
    GeneIDi 100349921.
    100356144.

    Organism-specific databases

    CTDi 6222.

    Phylogenomic databases

    GeneTreei ENSGT00390000012691.
    OMAi QHILRVM.
    OrthoDBi EOG7Q5HG2.
    TreeFami TF317649.

    Family and domain databases

    Gene3Di 4.10.910.10. 1 hit.
    HAMAPi MF_01315. Ribosomal_S13_S18.
    InterProi IPR027437. 30s_Rbsml_prot_S13_C.
    IPR001892. Ribosomal_S13.
    IPR010979. Ribosomal_S13-like_H2TH.
    IPR018269. Ribosomal_S13_CS.
    [Graphical view ]
    Pfami PF00416. Ribosomal_S13. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF002134. Ribosomal_S13. 1 hit.
    SUPFAMi SSF46946. SSF46946. 1 hit.
    PROSITEi PS00646. RIBOSOMAL_S13_1. 1 hit.
    PS50159. RIBOSOMAL_S13_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome Sequence of Oryctolagus cuniculus (European rabbit)."
      The Genome Sequencing Platform
      Di Palma F., Heiman D., Young S., Gnerre S., Johnson J., Lander E.S., Lindblad-Toh K.
      Submitted (AUG-2009) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ThorbeckeImported.
    2. "A high-resolution map of human evolutionary constraint using 29 mammals."
      Lindblad-Toh K., Garber M., Zuk O., Lin M.F., Parker B.J., Washietl S., Kheradpour P., Ernst J., Jordan G., Mauceli E., Ward L.D., Lowe C.B., Holloway A.K., Clamp M., Gnerre S., Alfoldi J., Beal K., Chang J.
      , Clawson H., Cuff J., Di Palma F., Fitzgerald S., Flicek P., Guttman M., Hubisz M.J., Jaffe D.B., Jungreis I., Kent W.J., Kostka D., Lara M., Martins A.L., Massingham T., Moltke I., Raney B.J., Rasmussen M.D., Robinson J., Stark A., Vilella A.J., Wen J., Xie X., Zody M.C., Baldwin J., Bloom T., Chin C.W., Heiman D., Nicol R., Nusbaum C., Young S., Wilkinson J., Worley K.C., Kovar C.L., Muzny D.M., Gibbs R.A., Cree A., Dihn H.H., Fowler G., Jhangiani S., Joshi V., Lee S., Lewis L.R., Nazareth L.V., Okwuonu G., Santibanez J., Warren W.C., Mardis E.R., Weinstock G.M., Wilson R.K., Delehaunty K., Dooling D., Fronik C., Fulton L., Fulton B., Graves T., Minx P., Sodergren E., Birney E., Margulies E.H., Herrero J., Green E.D., Haussler D., Siepel A., Goldman N., Pollard K.S., Pedersen J.S., Lander E.S., Kellis M.
      Nature 478:476-482(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ThorbeckeImported.
    3. Ensembl
      Submitted (SEP-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: ThorbeckeImported.
    4. "The initiation of mammalian protein synthesis and mRNA scanning mechanism."
      Lomakin I.B., Steitz T.A.
      Nature 500:307-311(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (7.01 ANGSTROMS).

    Entry informationi

    Entry nameiG1TPG3_RABIT
    AccessioniPrimary (citable) accession number: G1TPG3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 19, 2011
    Last sequence update: October 19, 2011
    Last modified: October 1, 2014
    This is version 26 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    3D-structureImported, Complete proteome, Reference proteomeImported

    External Data

    Dasty 3