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G1TNM3

- G1TNM3_RABIT

UniProt

G1TNM3 - G1TNM3_RABIT

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Protein
Submitted name:

Uncharacterized protein

Gene
LOC100356086
Organism
Oryctolagus cuniculus (Rabbit)
Status
Unreviewed - Annotation score: 1 out of 5 - Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. RNA binding Source: InterPro
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal proteinUniRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:LOC100356086Imported
OrganismiOryctolagus cuniculus (Rabbit)Imported
Taxonomic identifieri9986 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresLagomorphaLeporidaeOryctolagus
ProteomesiUP000001811: Chromosome 1

Subcellular locationi

GO - Cellular componenti

  1. small ribosomal subunit Source: InterPro
Complete GO annotation...

PTM / Processingi

Proteomic databases

PRIDEiG1TNM3.

Interactioni

Protein-protein interaction databases

IntActiG1TNM3. 1 interaction.

Structurei

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4KZXX-ray7.81D39-281[»]
4KZYX-ray7.01D39-281[»]
4KZZX-ray7.03D39-281[»]

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S3P family.UniRule annotation
Contains 1 KH type-2 domain.UniRule annotation

Phylogenomic databases

GeneTreeiENSGT00390000008610.
OrthoDBiEOG7F7W9M.
TreeFamiTF300901.

Family and domain databases

Gene3Di3.30.1140.32. 1 hit.
3.30.300.20. 1 hit.
InterProiIPR004087. KH_dom.
IPR015946. KH_dom-like_a/b.
IPR004044. KH_dom_type_2.
IPR009019. KH_prok-type.
IPR001351. Ribosomal_S3_C.
IPR018280. Ribosomal_S3_CS.
IPR005703. Ribosomal_S3_euk/arc.
[Graphical view]
PfamiPF07650. KH_2. 1 hit.
PF00189. Ribosomal_S3_C. 1 hit.
[Graphical view]
SMARTiSM00322. KH. 1 hit.
[Graphical view]
SUPFAMiSSF54814. SSF54814. 1 hit.
SSF54821. SSF54821. 1 hit.
TIGRFAMsiTIGR01008. rpsC_E_A. 1 hit.
PROSITEiPS50823. KH_TYPE_2. 1 hit.
PS00548. RIBOSOMAL_S3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G1TNM3-1 [UniParc]FASTAAdd to Basket

« Hide

MSARRRRRRA AFRRRAEPFI PISVREPLPF LSAARGGKMA VQISKKRKFV    50
ADGIFKAELN EFLTRELAED GYSGVEVRVT PTRTEIIILA TRTQNVLGEK 100
GRRIRELTAV VQKRFGFPEG SVELYAEKVA TRGLCAIAQA ESLRYKLLGG 150
LAVRRACYGV LRFIMESGAK GCEVVVSGKL RGQRAKSMKF VDGLMIHSGD 200
PVNYYVDTAV RHVLLRQGVL GIKVKIMLPW DPSGKIGPKK PLPDHVSIVE 250
PKDEILPTTP ISEQKGGKPE PPAMPQPVPT A 281
Length:281
Mass (Da):31,094
Last modified:November 13, 2013 - v2
Checksum:iEB18A9EFABF98D4A
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AAGW02008228 Genomic DNA. No translation available.
AAGW02008229 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSOCUT00000028446; ENSOCUP00000018598; ENSOCUG00000022412.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AAGW02008228 Genomic DNA. No translation available.
AAGW02008229 Genomic DNA. No translation available.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
4KZX X-ray 7.81 D 39-281 [» ]
4KZY X-ray 7.01 D 39-281 [» ]
4KZZ X-ray 7.03 D 39-281 [» ]
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

IntActi G1TNM3. 1 interaction.

Proteomic databases

PRIDEi G1TNM3.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSOCUT00000028446 ; ENSOCUP00000018598 ; ENSOCUG00000022412 .

Phylogenomic databases

GeneTreei ENSGT00390000008610.
OrthoDBi EOG7F7W9M.
TreeFami TF300901.

Family and domain databases

Gene3Di 3.30.1140.32. 1 hit.
3.30.300.20. 1 hit.
InterProi IPR004087. KH_dom.
IPR015946. KH_dom-like_a/b.
IPR004044. KH_dom_type_2.
IPR009019. KH_prok-type.
IPR001351. Ribosomal_S3_C.
IPR018280. Ribosomal_S3_CS.
IPR005703. Ribosomal_S3_euk/arc.
[Graphical view ]
Pfami PF07650. KH_2. 1 hit.
PF00189. Ribosomal_S3_C. 1 hit.
[Graphical view ]
SMARTi SM00322. KH. 1 hit.
[Graphical view ]
SUPFAMi SSF54814. SSF54814. 1 hit.
SSF54821. SSF54821. 1 hit.
TIGRFAMsi TIGR01008. rpsC_E_A. 1 hit.
PROSITEi PS50823. KH_TYPE_2. 1 hit.
PS00548. RIBOSOMAL_S3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Genome Sequence of Oryctolagus cuniculus (European rabbit)."
    The Genome Sequencing Platform
    Di Palma F., Heiman D., Young S., Gnerre S., Johnson J., Lander E.S., Lindblad-Toh K.
    Submitted (AUG-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ThorbeckeImported.
  2. "A high-resolution map of human evolutionary constraint using 29 mammals."
    Lindblad-Toh K., Garber M., Zuk O., Lin M.F., Parker B.J., Washietl S., Kheradpour P., Ernst J., Jordan G., Mauceli E., Ward L.D., Lowe C.B., Holloway A.K., Clamp M., Gnerre S., Alfoldi J., Beal K., Chang J.
    , Clawson H., Cuff J., Di Palma F., Fitzgerald S., Flicek P., Guttman M., Hubisz M.J., Jaffe D.B., Jungreis I., Kent W.J., Kostka D., Lara M., Martins A.L., Massingham T., Moltke I., Raney B.J., Rasmussen M.D., Robinson J., Stark A., Vilella A.J., Wen J., Xie X., Zody M.C., Baldwin J., Bloom T., Chin C.W., Heiman D., Nicol R., Nusbaum C., Young S., Wilkinson J., Worley K.C., Kovar C.L., Muzny D.M., Gibbs R.A., Cree A., Dihn H.H., Fowler G., Jhangiani S., Joshi V., Lee S., Lewis L.R., Nazareth L.V., Okwuonu G., Santibanez J., Warren W.C., Mardis E.R., Weinstock G.M., Wilson R.K., Delehaunty K., Dooling D., Fronik C., Fulton L., Fulton B., Graves T., Minx P., Sodergren E., Birney E., Margulies E.H., Herrero J., Green E.D., Haussler D., Siepel A., Goldman N., Pollard K.S., Pedersen J.S., Lander E.S., Kellis M.
    Nature 478:476-482(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Thorbecke.
  3. Ensembl
    Submitted (SEP-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: ThorbeckeImported.
  4. "The initiation of mammalian protein synthesis and mRNA scanning mechanism."
    Lomakin I.B., Steitz T.A.
    Nature 500:307-311(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (7.01 ANGSTROMS) OF 39-281.

Entry informationi

Entry nameiG1TNM3_RABIT
AccessioniPrimary (citable) accession number: G1TNM3
Entry historyi
Integrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: November 13, 2013
Last modified: July 9, 2014
This is version 22 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

3D-structureImported, Complete proteome, Reference proteome

External Data

Dasty 3

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