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G1TNM3 (G1TNM3_RABIT) Unreviewed, UniProtKB/TrEMBL

Last modified March 19, 2014. Version 19. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length281 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Sequence similarities

Belongs to the ribosomal protein S3P family. RuleBase RU003624

Contains 1 KH type-2 domain. RuleBase RU003542

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSOCUP00000018598

Sequences

Sequence LengthMass (Da)Tools
G1TNM3 [UniParc].

Last modified November 13, 2013. Version 2.
Checksum: EB18A9EFABF98D4A

FASTA28131,094
        10         20         30         40         50         60 
MSARRRRRRA AFRRRAEPFI PISVREPLPF LSAARGGKMA VQISKKRKFV ADGIFKAELN 

        70         80         90        100        110        120 
EFLTRELAED GYSGVEVRVT PTRTEIIILA TRTQNVLGEK GRRIRELTAV VQKRFGFPEG 

       130        140        150        160        170        180 
SVELYAEKVA TRGLCAIAQA ESLRYKLLGG LAVRRACYGV LRFIMESGAK GCEVVVSGKL 

       190        200        210        220        230        240 
RGQRAKSMKF VDGLMIHSGD PVNYYVDTAV RHVLLRQGVL GIKVKIMLPW DPSGKIGPKK 

       250        260        270        280 
PLPDHVSIVE PKDEILPTTP ISEQKGGKPE PPAMPQPVPT A 

« Hide

References

« Hide 'large scale' references
[1]"Genome Sequence of Oryctolagus cuniculus (European rabbit)."
The Genome Sequencing Platform
Di Palma F., Heiman D., Young S., Gnerre S., Johnson J., Lander E.S., Lindblad-Toh K.
Submitted (AUG-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Thorbecke Ensembl ENSOCUP00000018598.
[2]Ensembl
Submitted (SEP-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Thorbecke Ensembl ENSOCUP00000018598.
[3]"The initiation of mammalian protein synthesis and mRNA scanning mechanism."
Lomakin I.B., Steitz T.A.
Nature 500:307-311(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (7.01 ANGSTROMS) OF 39-281.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AAGW02008228 Genomic DNA. No translation available.
AAGW02008229 Genomic DNA. No translation available.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
4KZXX-ray7.81D39-281[»]
4KZYX-ray7.01D39-281[»]
4KZZX-ray7.03D39-281[»]
ProteinModelPortalG1TNM3.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

IntActG1TNM3. 1 interaction.

Proteomic databases

PRIDEG1TNM3.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSOCUT00000028446; ENSOCUP00000018598; ENSOCUG00000022412.

Phylogenomic databases

GeneTreeENSGT00390000008610.
OMACNDYVET.
OrthoDBEOG7F7W9M.
TreeFamTF300901.

Family and domain databases

Gene3D3.30.1140.32. 1 hit.
3.30.300.20. 1 hit.
InterProIPR004087. KH_dom.
IPR015946. KH_dom-like_a/b.
IPR004044. KH_dom_type_2.
IPR009019. KH_prok-type.
IPR001351. Ribosomal_S3_C.
IPR018280. Ribosomal_S3_CS.
IPR005703. Ribosomal_S3_euk/arc.
[Graphical view]
PfamPF07650. KH_2. 1 hit.
PF00189. Ribosomal_S3_C. 1 hit.
[Graphical view]
SMARTSM00322. KH. 1 hit.
[Graphical view]
SUPFAMSSF54814. SSF54814. 1 hit.
SSF54821. SSF54821. 1 hit.
TIGRFAMsTIGR01008. rpsC_E_A. 1 hit.
PROSITEPS50823. KH_TYPE_2. 1 hit.
PS00548. RIBOSOMAL_S3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameG1TNM3_RABIT
AccessionPrimary (citable) accession number: G1TNM3
Entry history
Integrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: November 13, 2013
Last modified: March 19, 2014
This is version 19 of the entry and version 2 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)