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G1TNM3

- G1TNM3_RABIT

UniProt

G1TNM3 - G1TNM3_RABIT

Protein
Submitted name:

Uncharacterized protein

Gene

LOC100356086

Organism
Oryctolagus cuniculus (Rabbit)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 23 (01 Oct 2014)
      Sequence version 2 (13 Nov 2013)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. RNA binding Source: InterPro
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal proteinUniRule annotation

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Uncharacterized proteinImported
    Gene namesi
    Name:LOC100356086Imported
    OrganismiOryctolagus cuniculus (Rabbit)Imported
    Taxonomic identifieri9986 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresLagomorphaLeporidaeOryctolagus
    ProteomesiUP000001811: Chromosome 1

    Subcellular locationi

    GO - Cellular componenti

    1. small ribosomal subunit Source: InterPro

    PTM / Processingi

    Proteomic databases

    PRIDEiG1TNM3.

    Interactioni

    Protein-protein interaction databases

    IntActiG1TNM3. 1 interaction.

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    4KZXX-ray7.81D39-281[»]
    4KZYX-ray7.01D39-281[»]
    4KZZX-ray7.03D39-281[»]
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein S3P family.UniRule annotation
    Contains 1 KH type-2 domain.UniRule annotation

    Phylogenomic databases

    GeneTreeiENSGT00390000008610.
    OrthoDBiEOG7F7W9M.
    TreeFamiTF300901.

    Family and domain databases

    Gene3Di3.30.1140.32. 1 hit.
    3.30.300.20. 1 hit.
    InterProiIPR004087. KH_dom.
    IPR015946. KH_dom-like_a/b.
    IPR004044. KH_dom_type_2.
    IPR009019. KH_prok-type.
    IPR001351. Ribosomal_S3_C.
    IPR018280. Ribosomal_S3_CS.
    IPR005703. Ribosomal_S3_euk/arc.
    [Graphical view]
    PfamiPF07650. KH_2. 1 hit.
    PF00189. Ribosomal_S3_C. 1 hit.
    [Graphical view]
    SMARTiSM00322. KH. 1 hit.
    [Graphical view]
    SUPFAMiSSF54814. SSF54814. 1 hit.
    SSF54821. SSF54821. 1 hit.
    TIGRFAMsiTIGR01008. rpsC_E_A. 1 hit.
    PROSITEiPS50823. KH_TYPE_2. 1 hit.
    PS00548. RIBOSOMAL_S3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    G1TNM3-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSARRRRRRA AFRRRAEPFI PISVREPLPF LSAARGGKMA VQISKKRKFV    50
    ADGIFKAELN EFLTRELAED GYSGVEVRVT PTRTEIIILA TRTQNVLGEK 100
    GRRIRELTAV VQKRFGFPEG SVELYAEKVA TRGLCAIAQA ESLRYKLLGG 150
    LAVRRACYGV LRFIMESGAK GCEVVVSGKL RGQRAKSMKF VDGLMIHSGD 200
    PVNYYVDTAV RHVLLRQGVL GIKVKIMLPW DPSGKIGPKK PLPDHVSIVE 250
    PKDEILPTTP ISEQKGGKPE PPAMPQPVPT A 281
    Length:281
    Mass (Da):31,094
    Last modified:November 13, 2013 - v2
    Checksum:iEB18A9EFABF98D4A
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AAGW02008228 Genomic DNA. No translation available.
    AAGW02008229 Genomic DNA. No translation available.

    Genome annotation databases

    EnsembliENSOCUT00000028446; ENSOCUP00000018598; ENSOCUG00000022412.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AAGW02008228 Genomic DNA. No translation available.
    AAGW02008229 Genomic DNA. No translation available.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    4KZX X-ray 7.81 D 39-281 [» ]
    4KZY X-ray 7.01 D 39-281 [» ]
    4KZZ X-ray 7.03 D 39-281 [» ]
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    IntActi G1TNM3. 1 interaction.

    Proteomic databases

    PRIDEi G1TNM3.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSOCUT00000028446 ; ENSOCUP00000018598 ; ENSOCUG00000022412 .

    Phylogenomic databases

    GeneTreei ENSGT00390000008610.
    OrthoDBi EOG7F7W9M.
    TreeFami TF300901.

    Family and domain databases

    Gene3Di 3.30.1140.32. 1 hit.
    3.30.300.20. 1 hit.
    InterProi IPR004087. KH_dom.
    IPR015946. KH_dom-like_a/b.
    IPR004044. KH_dom_type_2.
    IPR009019. KH_prok-type.
    IPR001351. Ribosomal_S3_C.
    IPR018280. Ribosomal_S3_CS.
    IPR005703. Ribosomal_S3_euk/arc.
    [Graphical view ]
    Pfami PF07650. KH_2. 1 hit.
    PF00189. Ribosomal_S3_C. 1 hit.
    [Graphical view ]
    SMARTi SM00322. KH. 1 hit.
    [Graphical view ]
    SUPFAMi SSF54814. SSF54814. 1 hit.
    SSF54821. SSF54821. 1 hit.
    TIGRFAMsi TIGR01008. rpsC_E_A. 1 hit.
    PROSITEi PS50823. KH_TYPE_2. 1 hit.
    PS00548. RIBOSOMAL_S3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome Sequence of Oryctolagus cuniculus (European rabbit)."
      The Genome Sequencing Platform
      Di Palma F., Heiman D., Young S., Gnerre S., Johnson J., Lander E.S., Lindblad-Toh K.
      Submitted (AUG-2009) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ThorbeckeImported.
    2. "A high-resolution map of human evolutionary constraint using 29 mammals."
      Lindblad-Toh K., Garber M., Zuk O., Lin M.F., Parker B.J., Washietl S., Kheradpour P., Ernst J., Jordan G., Mauceli E., Ward L.D., Lowe C.B., Holloway A.K., Clamp M., Gnerre S., Alfoldi J., Beal K., Chang J.
      , Clawson H., Cuff J., Di Palma F., Fitzgerald S., Flicek P., Guttman M., Hubisz M.J., Jaffe D.B., Jungreis I., Kent W.J., Kostka D., Lara M., Martins A.L., Massingham T., Moltke I., Raney B.J., Rasmussen M.D., Robinson J., Stark A., Vilella A.J., Wen J., Xie X., Zody M.C., Baldwin J., Bloom T., Chin C.W., Heiman D., Nicol R., Nusbaum C., Young S., Wilkinson J., Worley K.C., Kovar C.L., Muzny D.M., Gibbs R.A., Cree A., Dihn H.H., Fowler G., Jhangiani S., Joshi V., Lee S., Lewis L.R., Nazareth L.V., Okwuonu G., Santibanez J., Warren W.C., Mardis E.R., Weinstock G.M., Wilson R.K., Delehaunty K., Dooling D., Fronik C., Fulton L., Fulton B., Graves T., Minx P., Sodergren E., Birney E., Margulies E.H., Herrero J., Green E.D., Haussler D., Siepel A., Goldman N., Pollard K.S., Pedersen J.S., Lander E.S., Kellis M.
      Nature 478:476-482(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ThorbeckeImported.
    3. Ensembl
      Submitted (SEP-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: ThorbeckeImported.
    4. "The initiation of mammalian protein synthesis and mRNA scanning mechanism."
      Lomakin I.B., Steitz T.A.
      Nature 500:307-311(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (7.01 ANGSTROMS) OF 39-281.

    Entry informationi

    Entry nameiG1TNM3_RABIT
    AccessioniPrimary (citable) accession number: G1TNM3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 19, 2011
    Last sequence update: November 13, 2013
    Last modified: October 1, 2014
    This is version 23 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    3D-structureImported, Complete proteome, Reference proteomeImported

    External Data

    Dasty 3