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Protein
Submitted name:

Uncharacterized protein

Gene
N/A
Organism
Oryctolagus cuniculus (Rabbit)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal proteinUniRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
OrganismiOryctolagus cuniculus (Rabbit)Imported
Taxonomic identifieri9986 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresLagomorphaLeporidaeOryctolagus
Proteomesi
  • UP000001811 Componenti: Chromosome 1

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Interactioni

Protein-protein interaction databases

IntActiG1TNM3. 1 interactor.
STRINGi9986.ENSOCUP00000018598.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3JAGelectron microscopy3.65DD39-265[»]
3JAHelectron microscopy3.45DD39-265[»]
3JAIelectron microscopy3.65DD39-265[»]
4D5Lelectron microscopy9.00D39-281[»]
4D61electron microscopy9.00D39-281[»]
4KZXX-ray7.81D39-281[»]
4KZYX-ray7.01D39-281[»]
4KZZX-ray7.03D39-281[»]
5K0Yelectron microscopy5.80g39-265[»]
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini59 – 130KH type-2InterPro annotationAdd BLAST72

Sequence similaritiesi

Belongs to the ribosomal protein S3P family.UniRule annotation

Phylogenomic databases

eggNOGiKOG3181. Eukaryota.
COG0092. LUCA.
GeneTreeiENSGT00390000008610.
InParanoidiG1TNM3.
OMAiQKFTEGY.
OrthoDBiEOG091G0I8D.
TreeFamiTF300901.

Family and domain databases

Gene3Di3.30.1140.32. 1 hit.
3.30.300.20. 1 hit.
InterProiIPR015946. KH_dom-like_a/b.
IPR004044. KH_dom_type_2.
IPR009019. KH_prok-type.
IPR001351. Ribosomal_S3_C.
IPR018280. Ribosomal_S3_CS.
IPR005703. Ribosomal_S3_euk/arc.
[Graphical view]
PfamiPF07650. KH_2. 1 hit.
[Graphical view]
SUPFAMiSSF54814. SSF54814. 1 hit.
SSF54821. SSF54821. 1 hit.
TIGRFAMsiTIGR01008. uS3_euk_arch. 1 hit.
PROSITEiPS50823. KH_TYPE_2. 1 hit.
PS00548. RIBOSOMAL_S3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G1TNM3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSARRRRRRA AFRRRAEPFI PISVREPLPF LSAARGGKMA VQISKKRKFV
60 70 80 90 100
ADGIFKAELN EFLTRELAED GYSGVEVRVT PTRTEIIILA TRTQNVLGEK
110 120 130 140 150
GRRIRELTAV VQKRFGFPEG SVELYAEKVA TRGLCAIAQA ESLRYKLLGG
160 170 180 190 200
LAVRRACYGV LRFIMESGAK GCEVVVSGKL RGQRAKSMKF VDGLMIHSGD
210 220 230 240 250
PVNYYVDTAV RHVLLRQGVL GIKVKIMLPW DPSGKIGPKK PLPDHVSIVE
260 270 280
PKDEILPTTP ISEQKGGKPE PPAMPQPVPT A
Length:281
Mass (Da):31,094
Last modified:November 13, 2013 - v2
Checksum:iEB18A9EFABF98D4A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAGW02008228 Genomic DNA. No translation available.
AAGW02008229 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSOCUT00000028446; ENSOCUP00000018598; ENSOCUG00000022412.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAGW02008228 Genomic DNA. No translation available.
AAGW02008229 Genomic DNA. No translation available.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3JAGelectron microscopy3.65DD39-265[»]
3JAHelectron microscopy3.45DD39-265[»]
3JAIelectron microscopy3.65DD39-265[»]
4D5Lelectron microscopy9.00D39-281[»]
4D61electron microscopy9.00D39-281[»]
4KZXX-ray7.81D39-281[»]
4KZYX-ray7.01D39-281[»]
4KZZX-ray7.03D39-281[»]
5K0Yelectron microscopy5.80g39-265[»]
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiG1TNM3. 1 interactor.
STRINGi9986.ENSOCUP00000018598.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSOCUT00000028446; ENSOCUP00000018598; ENSOCUG00000022412.

Phylogenomic databases

eggNOGiKOG3181. Eukaryota.
COG0092. LUCA.
GeneTreeiENSGT00390000008610.
InParanoidiG1TNM3.
OMAiQKFTEGY.
OrthoDBiEOG091G0I8D.
TreeFamiTF300901.

Family and domain databases

Gene3Di3.30.1140.32. 1 hit.
3.30.300.20. 1 hit.
InterProiIPR015946. KH_dom-like_a/b.
IPR004044. KH_dom_type_2.
IPR009019. KH_prok-type.
IPR001351. Ribosomal_S3_C.
IPR018280. Ribosomal_S3_CS.
IPR005703. Ribosomal_S3_euk/arc.
[Graphical view]
PfamiPF07650. KH_2. 1 hit.
[Graphical view]
SUPFAMiSSF54814. SSF54814. 1 hit.
SSF54821. SSF54821. 1 hit.
TIGRFAMsiTIGR01008. uS3_euk_arch. 1 hit.
PROSITEiPS50823. KH_TYPE_2. 1 hit.
PS00548. RIBOSOMAL_S3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiG1TNM3_RABIT
AccessioniPrimary (citable) accession number: G1TNM3
Entry historyi
Integrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: November 13, 2013
Last modified: November 30, 2016
This is version 38 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.