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G1TM82

- G1TM82_RABIT

UniProt

G1TM82 - G1TM82_RABIT

Protein

40S ribosomal protein S21

Gene

RPS21

Organism
Oryctolagus cuniculus (Rabbit)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
  1. Functioni

    GO - Molecular functioni

    1. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal proteinUniRule annotation

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    40S ribosomal protein S21UniRule annotation
    Gene namesi
    Name:RPS21Imported
    OrganismiOryctolagus cuniculus (Rabbit)Imported
    Taxonomic identifieri9986 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresLagomorphaLeporidaeOryctolagus
    ProteomesiUP000001811: Unplaced

    Subcellular locationi

    GO - Cellular componenti

    1. cytosolic small ribosomal subunit Source: Ensembl

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    4KZXX-ray7.81V1-83[»]
    4KZYX-ray7.01V1-83[»]
    4KZZX-ray7.03V1-83[»]
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein S21e family.UniRule annotation

    Phylogenomic databases

    GeneTreeiENSGT00390000017515.
    OMAiDHASIPM.
    OrthoDBiEOG7HQNBQ.
    TreeFamiTF300167.

    Family and domain databases

    InterProiIPR001931. Ribosomal_S21e.
    IPR018279. Ribosomal_S21e_CS.
    [Graphical view]
    PANTHERiPTHR10442. PTHR10442. 1 hit.
    PfamiPF01249. Ribosomal_S21e. 1 hit.
    [Graphical view]
    PIRSFiPIRSF002148. Ribosomal_S21e. 1 hit.
    ProDomiPD006584. Ribosomal_S21e. 1 hit.
    [Graphical view] [Entries sharing at least one domain]
    PROSITEiPS00996. RIBOSOMAL_S21E. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    G1TM82-1 [UniParc]FASTAAdd to Basket

    « Hide

    MQSNAGEFVD LYVPRKCSAS NRIIGAKDHA SIPMNVAEVD KVTGRFNGQS   50
    KTYAICGAIR RMGESDDSIL RLAKSHGIVS QNF 83
    Length:83
    Mass (Da):9,030
    Last modified:October 19, 2011 - v1
    Checksum:iE89189AAFB462BD0
    GO

    Sequence databases

    RefSeqiXP_002723418.1. XM_002723372.2.
    UniGeneiOcu.7344.

    Genome annotation databases

    EnsembliENSOCUT00000030260; ENSOCUP00000018090; ENSOCUG00000027307.
    GeneIDi100342677.

    Cross-referencesi

    Sequence databases

    RefSeqi XP_002723418.1. XM_002723372.2.
    UniGenei Ocu.7344.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    4KZX X-ray 7.81 V 1-83 [» ]
    4KZY X-ray 7.01 V 1-83 [» ]
    4KZZ X-ray 7.03 V 1-83 [» ]
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSOCUT00000030260 ; ENSOCUP00000018090 ; ENSOCUG00000027307 .
    GeneIDi 100342677.

    Organism-specific databases

    CTDi 6227.

    Phylogenomic databases

    GeneTreei ENSGT00390000017515.
    OMAi DHASIPM.
    OrthoDBi EOG7HQNBQ.
    TreeFami TF300167.

    Family and domain databases

    InterProi IPR001931. Ribosomal_S21e.
    IPR018279. Ribosomal_S21e_CS.
    [Graphical view ]
    PANTHERi PTHR10442. PTHR10442. 1 hit.
    Pfami PF01249. Ribosomal_S21e. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF002148. Ribosomal_S21e. 1 hit.
    ProDomi PD006584. Ribosomal_S21e. 1 hit.
    [Graphical view ] [Entries sharing at least one domain ]
    PROSITEi PS00996. RIBOSOMAL_S21E. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome Sequence of Oryctolagus cuniculus (European rabbit)."
      The Genome Sequencing Platform
      Di Palma F., Heiman D., Young S., Gnerre S., Johnson J., Lander E.S., Lindblad-Toh K.
      Submitted (AUG-2009) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ThorbeckeImported.
    2. "A high-resolution map of human evolutionary constraint using 29 mammals."
      Lindblad-Toh K., Garber M., Zuk O., Lin M.F., Parker B.J., Washietl S., Kheradpour P., Ernst J., Jordan G., Mauceli E., Ward L.D., Lowe C.B., Holloway A.K., Clamp M., Gnerre S., Alfoldi J., Beal K., Chang J.
      , Clawson H., Cuff J., Di Palma F., Fitzgerald S., Flicek P., Guttman M., Hubisz M.J., Jaffe D.B., Jungreis I., Kent W.J., Kostka D., Lara M., Martins A.L., Massingham T., Moltke I., Raney B.J., Rasmussen M.D., Robinson J., Stark A., Vilella A.J., Wen J., Xie X., Zody M.C., Baldwin J., Bloom T., Chin C.W., Heiman D., Nicol R., Nusbaum C., Young S., Wilkinson J., Worley K.C., Kovar C.L., Muzny D.M., Gibbs R.A., Cree A., Dihn H.H., Fowler G., Jhangiani S., Joshi V., Lee S., Lewis L.R., Nazareth L.V., Okwuonu G., Santibanez J., Warren W.C., Mardis E.R., Weinstock G.M., Wilson R.K., Delehaunty K., Dooling D., Fronik C., Fulton L., Fulton B., Graves T., Minx P., Sodergren E., Birney E., Margulies E.H., Herrero J., Green E.D., Haussler D., Siepel A., Goldman N., Pollard K.S., Pedersen J.S., Lander E.S., Kellis M.
      Nature 478:476-482(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ThorbeckeImported.
    3. Ensembl
      Submitted (SEP-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: ThorbeckeImported.
    4. "The initiation of mammalian protein synthesis and mRNA scanning mechanism."
      Lomakin I.B., Steitz T.A.
      Nature 500:307-311(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (7.01 ANGSTROMS).

    Entry informationi

    Entry nameiG1TM82_RABIT
    AccessioniPrimary (citable) accession number: G1TM82
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 19, 2011
    Last sequence update: October 19, 2011
    Last modified: October 1, 2014
    This is version 20 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    3D-structureImported, Complete proteome, Reference proteomeImported

    External Data

    Dasty 3