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G1TM82 (G1TM82_RABIT) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 17. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length83 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Sequence similarities

Belongs to the ribosomal protein S21e family. PIRNR PIRNR002148

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSOCUP00000018090

Sequences

Sequence LengthMass (Da)Tools
G1TM82 [UniParc].

Last modified October 19, 2011. Version 1.
Checksum: E89189AAFB462BD0

FASTA839,030
        10         20         30         40         50         60 
MQSNAGEFVD LYVPRKCSAS NRIIGAKDHA SIPMNVAEVD KVTGRFNGQS KTYAICGAIR 

        70         80 
RMGESDDSIL RLAKSHGIVS QNF 

« Hide

References

« Hide 'large scale' references
[1]"Genome Sequence of Oryctolagus cuniculus (European rabbit)."
The Genome Sequencing Platform
Di Palma F., Heiman D., Young S., Gnerre S., Johnson J., Lander E.S., Lindblad-Toh K.
Submitted (AUG-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Thorbecke Ensembl ENSOCUP00000018090.
[2]"A high-resolution map of human evolutionary constraint using 29 mammals."
Lindblad-Toh K., Garber M., Zuk O., Lin M.F., Parker B.J., Washietl S., Kheradpour P., Ernst J., Jordan G., Mauceli E., Ward L.D., Lowe C.B., Holloway A.K., Clamp M., Gnerre S., Alfoldi J., Beal K., Chang J. expand/collapse author list , Clawson H., Cuff J., Di Palma F., Fitzgerald S., Flicek P., Guttman M., Hubisz M.J., Jaffe D.B., Jungreis I., Kent W.J., Kostka D., Lara M., Martins A.L., Massingham T., Moltke I., Raney B.J., Rasmussen M.D., Robinson J., Stark A., Vilella A.J., Wen J., Xie X., Zody M.C., Baldwin J., Bloom T., Chin C.W., Heiman D., Nicol R., Nusbaum C., Young S., Wilkinson J., Worley K.C., Kovar C.L., Muzny D.M., Gibbs R.A., Cree A., Dihn H.H., Fowler G., Jhangiani S., Joshi V., Lee S., Lewis L.R., Nazareth L.V., Okwuonu G., Santibanez J., Warren W.C., Mardis E.R., Weinstock G.M., Wilson R.K., Delehaunty K., Dooling D., Fronik C., Fulton L., Fulton B., Graves T., Minx P., Sodergren E., Birney E., Margulies E.H., Herrero J., Green E.D., Haussler D., Siepel A., Goldman N., Pollard K.S., Pedersen J.S., Lander E.S., Kellis M.
Nature 478:476-482(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Thorbecke.
[3]Ensembl
Submitted (SEP-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Thorbecke Ensembl ENSOCUP00000018090.
[4]"The initiation of mammalian protein synthesis and mRNA scanning mechanism."
Lomakin I.B., Steitz T.A.
Nature 500:307-311(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (7.01 ANGSTROMS).

Cross-references

Sequence databases

RefSeqXP_002723418.1. XM_002723372.1.
UniGeneOcu.7344.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
4KZXX-ray7.81V1-83[»]
4KZYX-ray7.01V1-83[»]
4KZZX-ray7.03V1-83[»]
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSOCUT00000030260; ENSOCUP00000018090; ENSOCUG00000027307.
GeneID100342677.

Phylogenomic databases

GeneTreeENSGT00390000017515.
OMAMENDQGV.
OrthoDBEOG7HQNBQ.
TreeFamTF300167.

Family and domain databases

InterProIPR001931. Ribosomal_S21e.
IPR018279. Ribosomal_S21e_CS.
[Graphical view]
PANTHERPTHR10442. PTHR10442. 1 hit.
PfamPF01249. Ribosomal_S21e. 1 hit.
[Graphical view]
PIRSFPIRSF002148. Ribosomal_S21e. 1 hit.
ProDomPD006584. Ribosomal_S21e. 1 hit.
[Graphical view] [Entries sharing at least one domain]
PROSITEPS00996. RIBOSOMAL_S21E. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameG1TM82_RABIT
AccessionPrimary (citable) accession number: G1TM82
Entry history
Integrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: April 16, 2014
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)