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G1TM55 (G1TM55_RABIT) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 26. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length249 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Sequence similarities

Belongs to the ribosomal protein S6e family. PIRNR PIRNR002129

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSOCUP00000002892 Ensembl ENSOCUP00000018062 Ensembl ENSOCUP00000018827

Sequences

Sequence LengthMass (Da)Tools
G1TM55 [UniParc].

Last modified October 19, 2011. Version 1.
Checksum: A61E435884E636AE

FASTA24928,681
        10         20         30         40         50         60 
MKLNISFPAT GCQKLIEVDD ERKLRTFYEK RMATEVAADA LGEEWKGYVV RISGGNDKQG 

        70         80         90        100        110        120 
FPMKQGVLTH GRVRLLLSKG HSCYRPRRTG ERKRKSVRGC IVDANLSVLN LVIVKKGEKD 

       130        140        150        160        170        180 
IPGLTDTTVP RRLGPKRASR IRKLFNLSKE DDVRQYVVRK PLNKEGKKPR TKAPKIQRLV 

       190        200        210        220        230        240 
TPRVLQHKRR RIALKKQRTK KNKEEAAEYA KLLAKRMKEA KEKRQEQIAK RRRLSSLRAS 


TSKSESSQK 

« Hide

References

« Hide 'large scale' references
[1]"Genome Sequence of Oryctolagus cuniculus (European rabbit)."
The Genome Sequencing Platform
Di Palma F., Heiman D., Young S., Gnerre S., Johnson J., Lander E.S., Lindblad-Toh K.
Submitted (AUG-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Thorbecke Ensembl ENSOCUP00000002892 Ensembl ENSOCUP00000018062 Ensembl ENSOCUP00000018827.
[2]"A high-resolution map of human evolutionary constraint using 29 mammals."
Lindblad-Toh K., Garber M., Zuk O., Lin M.F., Parker B.J., Washietl S., Kheradpour P., Ernst J., Jordan G., Mauceli E., Ward L.D., Lowe C.B., Holloway A.K., Clamp M., Gnerre S., Alfoldi J., Beal K., Chang J. expand/collapse author list , Clawson H., Cuff J., Di Palma F., Fitzgerald S., Flicek P., Guttman M., Hubisz M.J., Jaffe D.B., Jungreis I., Kent W.J., Kostka D., Lara M., Martins A.L., Massingham T., Moltke I., Raney B.J., Rasmussen M.D., Robinson J., Stark A., Vilella A.J., Wen J., Xie X., Zody M.C., Baldwin J., Bloom T., Chin C.W., Heiman D., Nicol R., Nusbaum C., Young S., Wilkinson J., Worley K.C., Kovar C.L., Muzny D.M., Gibbs R.A., Cree A., Dihn H.H., Fowler G., Jhangiani S., Joshi V., Lee S., Lewis L.R., Nazareth L.V., Okwuonu G., Santibanez J., Warren W.C., Mardis E.R., Weinstock G.M., Wilson R.K., Delehaunty K., Dooling D., Fronik C., Fulton L., Fulton B., Graves T., Minx P., Sodergren E., Birney E., Margulies E.H., Herrero J., Green E.D., Haussler D., Siepel A., Goldman N., Pollard K.S., Pedersen J.S., Lander E.S., Kellis M.
Nature 478:476-482(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Thorbecke.
[3]Ensembl
Submitted (SEP-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Thorbecke Ensembl ENSOCUP00000002892 Ensembl ENSOCUP00000018062 Ensembl ENSOCUP00000018827.
[4]"The initiation of mammalian protein synthesis and mRNA scanning mechanism."
Lomakin I.B., Steitz T.A.
Nature 500:307-311(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (7.01 ANGSTROMS).

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AAGW02010793 Genomic DNA. No translation available.
AAGW02032994 Genomic DNA. No translation available.
RefSeqXP_002708126.1. XM_002708080.1.
XP_002709459.1. XM_002709413.1.
XP_002720925.1. XM_002720879.1.
UniGeneOcu.1550.
Ocu.8074.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
4KZXX-ray7.81G1-249[»]
4KZYX-ray7.01G1-249[»]
4KZZX-ray7.03G1-249[»]
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSOCUT00000003335; ENSOCUP00000002892; ENSOCUG00000003336.
ENSOCUT00000029397; ENSOCUP00000018827; ENSOCUG00000028076.
ENSOCUT00000030834; ENSOCUP00000018062; ENSOCUG00000025205.
GeneID100338367.
100339133.
100346923.

Phylogenomic databases

GeneTreeENSGT00390000009819.
OMACQKLFEV.
KGDNDLP.
OrthoDBEOG7Z0JXB.
TreeFamTF300035.

Family and domain databases

InterProIPR014401. Ribosomal_S6_euk.
IPR001377. Ribosomal_S6e.
IPR018282. Ribosomal_S6e_CS.
[Graphical view]
PANTHERPTHR11502. PTHR11502. 1 hit.
PfamPF01092. Ribosomal_S6e. 1 hit.
[Graphical view]
PIRSFPIRSF002129. Ribosom_S6_euk. 1 hit.
PROSITEPS00578. RIBOSOMAL_S6E. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameG1TM55_RABIT
AccessionPrimary (citable) accession number: G1TM55
Secondary accession number(s): G1SJH6
Entry history
Integrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: April 16, 2014
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)