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G1TM55

- G1TM55_RABIT

UniProt

G1TM55 - G1TM55_RABIT

Protein

40S ribosomal protein S6

Gene

LOC100348810

Organism
Oryctolagus cuniculus (Rabbit)
Status
Unreviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 29 (01 Oct 2014)
      Sequence version 1 (19 Oct 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. glucose homeostasis Source: Ensembl
    2. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal proteinUniRule annotation

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    40S ribosomal protein S6UniRule annotation
    Gene namesi
    Name:LOC100348810Imported
    Synonyms:RPS6Imported
    OrganismiOryctolagus cuniculus (Rabbit)Imported
    Taxonomic identifieri9986 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresLagomorphaLeporidaeOryctolagus
    ProteomesiUP000001811: Unplaced

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    4KZXX-ray7.81G1-249[»]
    4KZYX-ray7.01G1-249[»]
    4KZZX-ray7.03G1-249[»]
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein S6e family.UniRule annotation

    Phylogenomic databases

    GeneTreeiENSGT00390000009819.
    OMAiCQKLFEV.
    OrthoDBiEOG7Z0JXB.
    TreeFamiTF300035.

    Family and domain databases

    InterProiIPR014401. Ribosomal_S6_euk.
    IPR001377. Ribosomal_S6e.
    IPR018282. Ribosomal_S6e_CS.
    [Graphical view]
    PANTHERiPTHR11502. PTHR11502. 1 hit.
    PfamiPF01092. Ribosomal_S6e. 1 hit.
    [Graphical view]
    PIRSFiPIRSF002129. Ribosom_S6_euk. 1 hit.
    PROSITEiPS00578. RIBOSOMAL_S6E. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    G1TM55-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKLNISFPAT GCQKLIEVDD ERKLRTFYEK RMATEVAADA LGEEWKGYVV    50
    RISGGNDKQG FPMKQGVLTH GRVRLLLSKG HSCYRPRRTG ERKRKSVRGC 100
    IVDANLSVLN LVIVKKGEKD IPGLTDTTVP RRLGPKRASR IRKLFNLSKE 150
    DDVRQYVVRK PLNKEGKKPR TKAPKIQRLV TPRVLQHKRR RIALKKQRTK 200
    KNKEEAAEYA KLLAKRMKEA KEKRQEQIAK RRRLSSLRAS TSKSESSQK 249
    Length:249
    Mass (Da):28,681
    Last modified:October 19, 2011 - v1
    Checksum:iA61E435884E636AE
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AAGW02010793 Genomic DNA. No translation available.
    AAGW02032994 Genomic DNA. No translation available.
    RefSeqiXP_002708126.1. XM_002708080.2.
    XP_002709459.1. XM_002709413.2.
    UniGeneiOcu.1550.
    Ocu.8074.

    Genome annotation databases

    EnsembliENSOCUT00000003335; ENSOCUP00000002892; ENSOCUG00000003336.
    ENSOCUT00000029397; ENSOCUP00000018827; ENSOCUG00000028076.
    ENSOCUT00000030834; ENSOCUP00000018062; ENSOCUG00000025205.
    GeneIDi100338367.
    100339133.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AAGW02010793 Genomic DNA. No translation available.
    AAGW02032994 Genomic DNA. No translation available.
    RefSeqi XP_002708126.1. XM_002708080.2.
    XP_002709459.1. XM_002709413.2.
    UniGenei Ocu.1550.
    Ocu.8074.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    4KZX X-ray 7.81 G 1-249 [» ]
    4KZY X-ray 7.01 G 1-249 [» ]
    4KZZ X-ray 7.03 G 1-249 [» ]
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSOCUT00000003335 ; ENSOCUP00000002892 ; ENSOCUG00000003336 .
    ENSOCUT00000029397 ; ENSOCUP00000018827 ; ENSOCUG00000028076 .
    ENSOCUT00000030834 ; ENSOCUP00000018062 ; ENSOCUG00000025205 .
    GeneIDi 100338367.
    100339133.

    Organism-specific databases

    CTDi 6194.

    Phylogenomic databases

    GeneTreei ENSGT00390000009819.
    OMAi CQKLFEV.
    OrthoDBi EOG7Z0JXB.
    TreeFami TF300035.

    Family and domain databases

    InterProi IPR014401. Ribosomal_S6_euk.
    IPR001377. Ribosomal_S6e.
    IPR018282. Ribosomal_S6e_CS.
    [Graphical view ]
    PANTHERi PTHR11502. PTHR11502. 1 hit.
    Pfami PF01092. Ribosomal_S6e. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF002129. Ribosom_S6_euk. 1 hit.
    PROSITEi PS00578. RIBOSOMAL_S6E. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome Sequence of Oryctolagus cuniculus (European rabbit)."
      The Genome Sequencing Platform
      Di Palma F., Heiman D., Young S., Gnerre S., Johnson J., Lander E.S., Lindblad-Toh K.
      Submitted (AUG-2009) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ThorbeckeImported.
    2. "A high-resolution map of human evolutionary constraint using 29 mammals."
      Lindblad-Toh K., Garber M., Zuk O., Lin M.F., Parker B.J., Washietl S., Kheradpour P., Ernst J., Jordan G., Mauceli E., Ward L.D., Lowe C.B., Holloway A.K., Clamp M., Gnerre S., Alfoldi J., Beal K., Chang J.
      , Clawson H., Cuff J., Di Palma F., Fitzgerald S., Flicek P., Guttman M., Hubisz M.J., Jaffe D.B., Jungreis I., Kent W.J., Kostka D., Lara M., Martins A.L., Massingham T., Moltke I., Raney B.J., Rasmussen M.D., Robinson J., Stark A., Vilella A.J., Wen J., Xie X., Zody M.C., Baldwin J., Bloom T., Chin C.W., Heiman D., Nicol R., Nusbaum C., Young S., Wilkinson J., Worley K.C., Kovar C.L., Muzny D.M., Gibbs R.A., Cree A., Dihn H.H., Fowler G., Jhangiani S., Joshi V., Lee S., Lewis L.R., Nazareth L.V., Okwuonu G., Santibanez J., Warren W.C., Mardis E.R., Weinstock G.M., Wilson R.K., Delehaunty K., Dooling D., Fronik C., Fulton L., Fulton B., Graves T., Minx P., Sodergren E., Birney E., Margulies E.H., Herrero J., Green E.D., Haussler D., Siepel A., Goldman N., Pollard K.S., Pedersen J.S., Lander E.S., Kellis M.
      Nature 478:476-482(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ThorbeckeImported.
    3. Ensembl
      Submitted (SEP-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: ThorbeckeImported.
    4. "The initiation of mammalian protein synthesis and mRNA scanning mechanism."
      Lomakin I.B., Steitz T.A.
      Nature 500:307-311(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (7.01 ANGSTROMS).

    Entry informationi

    Entry nameiG1TM55_RABIT
    AccessioniPrimary (citable) accession number: G1TM55
    Secondary accession number(s): G1SJH6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 19, 2011
    Last sequence update: October 19, 2011
    Last modified: October 1, 2014
    This is version 29 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    3D-structureImported, Complete proteome, Reference proteomeImported

    External Data

    Dasty 3