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Protein

40S ribosomal protein S6

Gene

LOC100339133

Organism
Oryctolagus cuniculus (Rabbit)
Status
Unreviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal proteinUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S6UniRule annotation
Gene namesi
Name:LOC100339133Imported
Synonyms:RPS6Imported
OrganismiOryctolagus cuniculus (Rabbit)Imported
Taxonomic identifieri9986 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresLagomorphaLeporidaeOryctolagus
Proteomesi
  • UP000001811 Componentsi: Chromosome 1, Chromosome 2

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi9986.ENSOCUP00000018827.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3JAGelectron microscopy3.65GG1-237[»]
3JAHelectron microscopy3.45GG1-237[»]
3JAIelectron microscopy3.65GG1-237[»]
4D5Lelectron microscopy9.00G1-249[»]
4D61electron microscopy9.00G1-249[»]
4KZXX-ray7.81G1-249[»]
4KZYX-ray7.01G1-249[»]
4KZZX-ray7.03G1-249[»]
5K0Yelectron microscopy5.80q1-237[»]
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili203 – 237Sequence analysisAdd BLAST35

Sequence similaritiesi

Belongs to the ribosomal protein S6e family.UniRule annotation

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG1646. Eukaryota.
COG2125. LUCA.
GeneTreeiENSGT00390000009819.
KOiK02991.
OMAiEGKKERF.
OrthoDBiEOG091G089B.
TreeFamiTF300035.

Family and domain databases

InterProiIPR014401. Ribosomal_S6_euk.
IPR001377. Ribosomal_S6e.
IPR018282. Ribosomal_S6e_CS.
[Graphical view]
PANTHERiPTHR11502. PTHR11502. 1 hit.
PfamiPF01092. Ribosomal_S6e. 1 hit.
[Graphical view]
PIRSFiPIRSF002129. Ribosom_S6_euk. 1 hit.
SMARTiSM01405. Ribosomal_S6e. 1 hit.
[Graphical view]
PROSITEiPS00578. RIBOSOMAL_S6E. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G1TM55-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKLNISFPAT GCQKLIEVDD ERKLRTFYEK RMATEVAADA LGEEWKGYVV
60 70 80 90 100
RISGGNDKQG FPMKQGVLTH GRVRLLLSKG HSCYRPRRTG ERKRKSVRGC
110 120 130 140 150
IVDANLSVLN LVIVKKGEKD IPGLTDTTVP RRLGPKRASR IRKLFNLSKE
160 170 180 190 200
DDVRQYVVRK PLNKEGKKPR TKAPKIQRLV TPRVLQHKRR RIALKKQRTK
210 220 230 240
KNKEEAAEYA KLLAKRMKEA KEKRQEQIAK RRRLSSLRAS TSKSESSQK
Length:249
Mass (Da):28,681
Last modified:October 19, 2011 - v1
Checksum:iA61E435884E636AE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAGW02010793 Genomic DNA. No translation available.
AAGW02032994 Genomic DNA. No translation available.
RefSeqiXP_002708126.1. XM_002708080.3.
XP_002709459.1. XM_002709413.3.
XP_017205954.1. XM_017350465.1.

Genome annotation databases

EnsembliENSOCUT00000003335; ENSOCUP00000002892; ENSOCUG00000003336.
ENSOCUT00000029397; ENSOCUP00000018827; ENSOCUG00000028076.
ENSOCUT00000030834; ENSOCUP00000018062; ENSOCUG00000025205.
GeneIDi100338367.
100339133.
108178879.
KEGGiocu:100338367.
ocu:100339133.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAGW02010793 Genomic DNA. No translation available.
AAGW02032994 Genomic DNA. No translation available.
RefSeqiXP_002708126.1. XM_002708080.3.
XP_002709459.1. XM_002709413.3.
XP_017205954.1. XM_017350465.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3JAGelectron microscopy3.65GG1-237[»]
3JAHelectron microscopy3.45GG1-237[»]
3JAIelectron microscopy3.65GG1-237[»]
4D5Lelectron microscopy9.00G1-249[»]
4D61electron microscopy9.00G1-249[»]
4KZXX-ray7.81G1-249[»]
4KZYX-ray7.01G1-249[»]
4KZZX-ray7.03G1-249[»]
5K0Yelectron microscopy5.80q1-237[»]
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9986.ENSOCUP00000018827.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSOCUT00000003335; ENSOCUP00000002892; ENSOCUG00000003336.
ENSOCUT00000029397; ENSOCUP00000018827; ENSOCUG00000028076.
ENSOCUT00000030834; ENSOCUP00000018062; ENSOCUG00000025205.
GeneIDi100338367.
100339133.
108178879.
KEGGiocu:100338367.
ocu:100339133.

Organism-specific databases

CTDi6194.

Phylogenomic databases

eggNOGiKOG1646. Eukaryota.
COG2125. LUCA.
GeneTreeiENSGT00390000009819.
KOiK02991.
OMAiEGKKERF.
OrthoDBiEOG091G089B.
TreeFamiTF300035.

Family and domain databases

InterProiIPR014401. Ribosomal_S6_euk.
IPR001377. Ribosomal_S6e.
IPR018282. Ribosomal_S6e_CS.
[Graphical view]
PANTHERiPTHR11502. PTHR11502. 1 hit.
PfamiPF01092. Ribosomal_S6e. 1 hit.
[Graphical view]
PIRSFiPIRSF002129. Ribosom_S6_euk. 1 hit.
SMARTiSM01405. Ribosomal_S6e. 1 hit.
[Graphical view]
PROSITEiPS00578. RIBOSOMAL_S6E. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiG1TM55_RABIT
AccessioniPrimary (citable) accession number: G1TM55
Secondary accession number(s): G1SJH6
Entry historyi
Integrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: November 30, 2016
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.