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Protein

40S ribosomal protein S6

Gene

LOC100339133

Organism
Oryctolagus cuniculus (Rabbit)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal proteinUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S6UniRule annotation
Gene namesi
Name:LOC100339133Imported
Synonyms:RPS6Imported
OrganismiOryctolagus cuniculus (Rabbit)Imported
Taxonomic identifieri9986 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresLagomorphaLeporidaeOryctolagus
Proteomesi
  • UP000001811 Componentsi: Chromosome 1, Chromosome 2

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Expressioni

Gene expression databases

BgeeiENSOCUG00000003336

Interactioni

Protein-protein interaction databases

STRINGi9986.ENSOCUP00000018827

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3JAGelectron microscopy3.65GG1-237[»]
3JAHelectron microscopy3.45GG1-237[»]
3JAIelectron microscopy3.65GG1-237[»]
4D5Lelectron microscopy9.00G1-249[»]
4D61electron microscopy9.00G1-249[»]
4KZXX-ray7.81G1-249[»]
4KZYX-ray7.01G1-249[»]
4KZZX-ray7.03G1-249[»]
5K0Yelectron microscopy5.80q1-237[»]
5LZSelectron microscopy3.31GG1-249[»]
5LZTelectron microscopy3.65GG1-249[»]
5LZUelectron microscopy3.75GG1-249[»]
5LZVelectron microscopy3.35GG1-249[»]
5LZWelectron microscopy3.53GG1-249[»]
5LZXelectron microscopy3.67GG1-249[»]
5LZYelectron microscopy3.99GG1-249[»]
5LZZelectron microscopy3.47GG1-249[»]
SMRiG1TM55
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili203 – 237Sequence analysisAdd BLAST35

Sequence similaritiesi

Belongs to the eukaryotic ribosomal protein eS6 family.UniRule annotation

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG1646 Eukaryota
COG2125 LUCA
GeneTreeiENSGT00390000009819
KOiK02991
OMAiKGYIFRI
OrthoDBiEOG091G089B
TreeFamiTF300035

Family and domain databases

InterProiView protein in InterPro
IPR014401 Ribosomal_S6_euk
IPR001377 Ribosomal_S6e
IPR018282 Ribosomal_S6e_CS
PANTHERiPTHR11502 PTHR11502, 1 hit
PfamiView protein in Pfam
PF01092 Ribosomal_S6e, 1 hit
PIRSFiPIRSF002129 Ribosom_S6_euk, 1 hit
SMARTiView protein in SMART
SM01405 Ribosomal_S6e, 1 hit
PROSITEiView protein in PROSITE
PS00578 RIBOSOMAL_S6E, 1 hit

Sequencei

Sequence statusi: Complete.

G1TM55-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKLNISFPAT GCQKLIEVDD ERKLRTFYEK RMATEVAADA LGEEWKGYVV
60 70 80 90 100
RISGGNDKQG FPMKQGVLTH GRVRLLLSKG HSCYRPRRTG ERKRKSVRGC
110 120 130 140 150
IVDANLSVLN LVIVKKGEKD IPGLTDTTVP RRLGPKRASR IRKLFNLSKE
160 170 180 190 200
DDVRQYVVRK PLNKEGKKPR TKAPKIQRLV TPRVLQHKRR RIALKKQRTK
210 220 230 240
KNKEEAAEYA KLLAKRMKEA KEKRQEQIAK RRRLSSLRAS TSKSESSQK
Length:249
Mass (Da):28,681
Last modified:October 19, 2011 - v1
Checksum:iA61E435884E636AE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAGW02010793 Genomic DNA No translation available.
AAGW02032994 Genomic DNA No translation available.
RefSeqiXP_002708126.1, XM_002708080.3
XP_002709459.1, XM_002709413.3
XP_017205954.1, XM_017350465.1

Genome annotation databases

EnsembliENSOCUT00000003335; ENSOCUP00000002892; ENSOCUG00000003336
ENSOCUT00000029397; ENSOCUP00000018827; ENSOCUG00000028076
ENSOCUT00000030834; ENSOCUP00000018062; ENSOCUG00000025205
GeneIDi100338367
100339133
108178879
KEGGiocu:100338367
ocu:100339133
ocu:108178879

Similar proteinsi

Entry informationi

Entry nameiG1TM55_RABIT
AccessioniPrimary (citable) accession number: G1TM55
Secondary accession number(s): G1SJH6
Entry historyiIntegrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: May 23, 2018
This is version 69 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

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