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G1TJW1

- G1TJW1_RABIT

UniProt

G1TJW1 - G1TJW1_RABIT

Protein

40S ribosomal protein S8

Gene

RPS8

Organism
Oryctolagus cuniculus (Rabbit)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 21 (01 Oct 2014)
      Sequence version 1 (19 Oct 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal proteinUniRule annotation

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    40S ribosomal protein S8UniRule annotation
    Gene namesi
    Name:RPS8Imported
    OrganismiOryctolagus cuniculus (Rabbit)Imported
    Taxonomic identifieri9986 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresLagomorphaLeporidaeOryctolagus
    ProteomesiUP000001811: Chromosome 1

    Subcellular locationi

    GO - Cellular componenti

    1. cytosolic small ribosomal subunit Source: Ensembl

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    4KZXX-ray7.81I1-208[»]
    4KZYX-ray7.01I1-208[»]
    4KZZX-ray7.03I1-208[»]
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein S8e family.UniRule annotation

    Phylogenomic databases

    GeneTreeiENSGT00390000012433.
    OMAiWASEQTT.
    OrthoDBiEOG7V1FRW.
    TreeFamiTF300041.

    Family and domain databases

    InterProiIPR001047. Ribosomal_S8e.
    IPR022309. Ribosomal_S8e/biogenesis_NSA2.
    IPR018283. Ribosomal_S8e_CS.
    [Graphical view]
    PANTHERiPTHR10394. PTHR10394. 1 hit.
    PfamiPF01201. Ribosomal_S8e. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR00307. S8e. 1 hit.
    PROSITEiPS01193. RIBOSOMAL_S8E. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    G1TJW1-1 [UniParc]FASTAAdd to Basket

    « Hide

    MGISRDNWHK RRKTGGKRKP YHKKRKYELG RPAANTKIGP RRIHTVGVRG    50
    GNKKYRALRL DVGNFSWGSE CCTRKTRIID VVYNASNNEL VRTKTLVKNC 100
    IVLIDSTPYR QWYESHYALP LGRKKGAKLT PEEEEILNKK RSKKIQKKYD 150
    ERKKNAKISS LLEEQFQQGK LLACIASRPG QCGRADGYVL EGKELEFYLR 200
    KIKARKGK 208
    Length:208
    Mass (Da):24,106
    Last modified:October 19, 2011 - v1
    Checksum:iB073789FC0C4043F
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AAGW02009607 Genomic DNA. No translation available.
    RefSeqiXP_002708870.1. XM_002708824.2.
    UniGeneiOcu.3600.

    Genome annotation databases

    EnsembliENSOCUT00000027418; ENSOCUP00000017241; ENSOCUG00000017511.
    GeneIDi100352057.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AAGW02009607 Genomic DNA. No translation available.
    RefSeqi XP_002708870.1. XM_002708824.2.
    UniGenei Ocu.3600.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    4KZX X-ray 7.81 I 1-208 [» ]
    4KZY X-ray 7.01 I 1-208 [» ]
    4KZZ X-ray 7.03 I 1-208 [» ]
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSOCUT00000027418 ; ENSOCUP00000017241 ; ENSOCUG00000017511 .
    GeneIDi 100352057.

    Phylogenomic databases

    GeneTreei ENSGT00390000012433.
    OMAi WASEQTT.
    OrthoDBi EOG7V1FRW.
    TreeFami TF300041.

    Family and domain databases

    InterProi IPR001047. Ribosomal_S8e.
    IPR022309. Ribosomal_S8e/biogenesis_NSA2.
    IPR018283. Ribosomal_S8e_CS.
    [Graphical view ]
    PANTHERi PTHR10394. PTHR10394. 1 hit.
    Pfami PF01201. Ribosomal_S8e. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR00307. S8e. 1 hit.
    PROSITEi PS01193. RIBOSOMAL_S8E. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "A high-resolution map of human evolutionary constraint using 29 mammals."
      Lindblad-Toh K., Garber M., Zuk O., Lin M.F., Parker B.J., Washietl S., Kheradpour P., Ernst J., Jordan G., Mauceli E., Ward L.D., Lowe C.B., Holloway A.K., Clamp M., Gnerre S., Alfoldi J., Beal K., Chang J.
      , Clawson H., Cuff J., Di Palma F., Fitzgerald S., Flicek P., Guttman M., Hubisz M.J., Jaffe D.B., Jungreis I., Kent W.J., Kostka D., Lara M., Martins A.L., Massingham T., Moltke I., Raney B.J., Rasmussen M.D., Robinson J., Stark A., Vilella A.J., Wen J., Xie X., Zody M.C., Baldwin J., Bloom T., Chin C.W., Heiman D., Nicol R., Nusbaum C., Young S., Wilkinson J., Worley K.C., Kovar C.L., Muzny D.M., Gibbs R.A., Cree A., Dihn H.H., Fowler G., Jhangiani S., Joshi V., Lee S., Lewis L.R., Nazareth L.V., Okwuonu G., Santibanez J., Warren W.C., Mardis E.R., Weinstock G.M., Wilson R.K., Delehaunty K., Dooling D., Fronik C., Fulton L., Fulton B., Graves T., Minx P., Sodergren E., Birney E., Margulies E.H., Herrero J., Green E.D., Haussler D., Siepel A., Goldman N., Pollard K.S., Pedersen J.S., Lander E.S., Kellis M.
      Nature 478:476-482(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ThorbeckeImported.
    2. Ensembl
      Submitted (SEP-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: ThorbeckeImported.
    3. "The initiation of mammalian protein synthesis and mRNA scanning mechanism."
      Lomakin I.B., Steitz T.A.
      Nature 500:307-311(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (7.01 ANGSTROMS).

    Entry informationi

    Entry nameiG1TJW1_RABIT
    AccessioniPrimary (citable) accession number: G1TJW1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 19, 2011
    Last sequence update: October 19, 2011
    Last modified: October 1, 2014
    This is version 21 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    3D-structureImported, Complete proteome, Reference proteomeImported

    External Data

    Dasty 3