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G1TFM5 (G1TFM5_RABIT) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 21. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length204 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Sequence similarities

Belongs to the ribosomal protein S7P family. RuleBase RU003619

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSOCUP00000015718

Sequences

Sequence LengthMass (Da)Tools
G1TFM5 [UniParc].

Last modified October 19, 2011. Version 1.
Checksum: DFE2FD5AAFCFD894

FASTA20422,876
        10         20         30         40         50         60 
MTEWETAAPA VAETPDIKLF GKWSTDDVQI NDISLQDYIA VKEKYAKYLP HSAGRYAAKR 

        70         80         90        100        110        120 
FRKAQCPIVE RLTNSMMMHG RNNGKKLMTV RIVKHAFEII HLLTGENPLQ VLVNAIINSG 

       130        140        150        160        170        180 
PREDSTRIGR AGTVRRQAVD VSPLRRVNQA IWLLCTGARE AAFRNIKTIA ECLADELINA 

       190        200 
AKGSSNSYAI KKKDELERVA KSNR 

« Hide

References

« Hide 'large scale' references
[1]"Genome Sequence of Oryctolagus cuniculus (European rabbit)."
The Genome Sequencing Platform
Di Palma F., Heiman D., Young S., Gnerre S., Johnson J., Lander E.S., Lindblad-Toh K.
Submitted (AUG-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Thorbecke Ensembl ENSOCUP00000015718.
[2]"A high-resolution map of human evolutionary constraint using 29 mammals."
Lindblad-Toh K., Garber M., Zuk O., Lin M.F., Parker B.J., Washietl S., Kheradpour P., Ernst J., Jordan G., Mauceli E., Ward L.D., Lowe C.B., Holloway A.K., Clamp M., Gnerre S., Alfoldi J., Beal K., Chang J. expand/collapse author list , Clawson H., Cuff J., Di Palma F., Fitzgerald S., Flicek P., Guttman M., Hubisz M.J., Jaffe D.B., Jungreis I., Kent W.J., Kostka D., Lara M., Martins A.L., Massingham T., Moltke I., Raney B.J., Rasmussen M.D., Robinson J., Stark A., Vilella A.J., Wen J., Xie X., Zody M.C., Baldwin J., Bloom T., Chin C.W., Heiman D., Nicol R., Nusbaum C., Young S., Wilkinson J., Worley K.C., Kovar C.L., Muzny D.M., Gibbs R.A., Cree A., Dihn H.H., Fowler G., Jhangiani S., Joshi V., Lee S., Lewis L.R., Nazareth L.V., Okwuonu G., Santibanez J., Warren W.C., Mardis E.R., Weinstock G.M., Wilson R.K., Delehaunty K., Dooling D., Fronik C., Fulton L., Fulton B., Graves T., Minx P., Sodergren E., Birney E., Margulies E.H., Herrero J., Green E.D., Haussler D., Siepel A., Goldman N., Pollard K.S., Pedersen J.S., Lander E.S., Kellis M.
Nature 478:476-482(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Thorbecke.
[3]Ensembl
Submitted (SEP-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Thorbecke Ensembl ENSOCUP00000015718.
[4]"The initiation of mammalian protein synthesis and mRNA scanning mechanism."
Lomakin I.B., Steitz T.A.
Nature 500:307-311(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (7.01 ANGSTROMS).

Cross-references

Sequence databases

RefSeqXP_002721942.1. XM_002721896.1.
UniGeneOcu.1241.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
4KZXX-ray7.81F1-204[»]
4KZYX-ray7.01F1-204[»]
4KZZX-ray7.03F1-204[»]
ProteinModelPortalG1TFM5.
SMRG1TFM5. Positions 14-204.
ModBaseSearch...
MobiDBSearch...

Proteomic databases

PRIDEG1TFM5.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSOCUT00000023676; ENSOCUP00000015718; ENSOCUG00000024505.
GeneID100340028.

Phylogenomic databases

GeneTreeENSGT00390000010806.
OMAPREETTR.
OrthoDBEOG7PZRZS.
TreeFamTF300872.

Family and domain databases

Gene3D1.10.455.10. 1 hit.
InterProIPR000235. Ribosomal_S5/S7.
IPR005716. Ribosomal_S5/S7_euk/arc.
IPR020606. Ribosomal_S7_CS.
IPR023798. Ribosomal_S7_dom.
[Graphical view]
PANTHERPTHR11205. PTHR11205. 1 hit.
PfamPF00177. Ribosomal_S7. 1 hit.
[Graphical view]
PIRSFPIRSF002122. RPS7p_RPS7a_RPS5e_RPS7o. 1 hit.
SUPFAMSSF47973. SSF47973. 1 hit.
TIGRFAMsTIGR01028. S7_S5_E_A. 1 hit.
PROSITEPS00052. RIBOSOMAL_S7. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameG1TFM5_RABIT
AccessionPrimary (citable) accession number: G1TFM5
Entry history
Integrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: April 16, 2014
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)