Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

G1TFM5

- G1TFM5_RABIT

UniProt

G1TFM5 - G1TFM5_RABIT

Protein
Submitted name:

Uncharacterized protein

Gene

RPS5

Organism
Oryctolagus cuniculus (Rabbit)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 24 (01 Oct 2014)
      Sequence version 1 (19 Oct 2011)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    GO - Molecular functioni

    1. mRNA binding Source: Ensembl
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. regulation of translational fidelity Source: Ensembl
    2. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal proteinUniRule annotation

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Uncharacterized proteinImported
    Gene namesi
    Name:RPS5Imported
    OrganismiOryctolagus cuniculus (Rabbit)Imported
    Taxonomic identifieri9986 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresLagomorphaLeporidaeOryctolagus
    ProteomesiUP000001811: Unplaced

    Subcellular locationi

    GO - Cellular componenti

    1. cytosolic small ribosomal subunit Source: Ensembl

    PTM / Processingi

    Proteomic databases

    PRIDEiG1TFM5.

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    4KZXX-ray7.81F1-204[»]
    4KZYX-ray7.01F1-204[»]
    4KZZX-ray7.03F1-204[»]
    ProteinModelPortaliG1TFM5.
    SMRiG1TFM5. Positions 14-204.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein S7P family.UniRule annotation

    Phylogenomic databases

    GeneTreeiENSGT00390000010806.
    OMAiPHSGGRY.
    OrthoDBiEOG7PZRZS.
    TreeFamiTF300872.

    Family and domain databases

    Gene3Di1.10.455.10. 1 hit.
    InterProiIPR000235. Ribosomal_S5/S7.
    IPR005716. Ribosomal_S5/S7_euk/arc.
    IPR020606. Ribosomal_S7_CS.
    IPR023798. Ribosomal_S7_dom.
    [Graphical view]
    PANTHERiPTHR11205. PTHR11205. 1 hit.
    PfamiPF00177. Ribosomal_S7. 1 hit.
    [Graphical view]
    PIRSFiPIRSF002122. RPS7p_RPS7a_RPS5e_RPS7o. 1 hit.
    SUPFAMiSSF47973. SSF47973. 1 hit.
    TIGRFAMsiTIGR01028. S7_S5_E_A. 1 hit.
    PROSITEiPS00052. RIBOSOMAL_S7. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    G1TFM5-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTEWETAAPA VAETPDIKLF GKWSTDDVQI NDISLQDYIA VKEKYAKYLP    50
    HSAGRYAAKR FRKAQCPIVE RLTNSMMMHG RNNGKKLMTV RIVKHAFEII 100
    HLLTGENPLQ VLVNAIINSG PREDSTRIGR AGTVRRQAVD VSPLRRVNQA 150
    IWLLCTGARE AAFRNIKTIA ECLADELINA AKGSSNSYAI KKKDELERVA 200
    KSNR 204
    Length:204
    Mass (Da):22,876
    Last modified:October 19, 2011 - v1
    Checksum:iDFE2FD5AAFCFD894
    GO

    Sequence databases

    RefSeqiXP_002721942.1. XM_002721896.2.
    UniGeneiOcu.1241.

    Genome annotation databases

    EnsembliENSOCUT00000023676; ENSOCUP00000015718; ENSOCUG00000024505.
    GeneIDi100340028.

    Cross-referencesi

    Sequence databases

    RefSeqi XP_002721942.1. XM_002721896.2.
    UniGenei Ocu.1241.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    4KZX X-ray 7.81 F 1-204 [» ]
    4KZY X-ray 7.01 F 1-204 [» ]
    4KZZ X-ray 7.03 F 1-204 [» ]
    ProteinModelPortali G1TFM5.
    SMRi G1TFM5. Positions 14-204.
    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PRIDEi G1TFM5.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSOCUT00000023676 ; ENSOCUP00000015718 ; ENSOCUG00000024505 .
    GeneIDi 100340028.

    Organism-specific databases

    CTDi 6193.

    Phylogenomic databases

    GeneTreei ENSGT00390000010806.
    OMAi PHSGGRY.
    OrthoDBi EOG7PZRZS.
    TreeFami TF300872.

    Family and domain databases

    Gene3Di 1.10.455.10. 1 hit.
    InterProi IPR000235. Ribosomal_S5/S7.
    IPR005716. Ribosomal_S5/S7_euk/arc.
    IPR020606. Ribosomal_S7_CS.
    IPR023798. Ribosomal_S7_dom.
    [Graphical view ]
    PANTHERi PTHR11205. PTHR11205. 1 hit.
    Pfami PF00177. Ribosomal_S7. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF002122. RPS7p_RPS7a_RPS5e_RPS7o. 1 hit.
    SUPFAMi SSF47973. SSF47973. 1 hit.
    TIGRFAMsi TIGR01028. S7_S5_E_A. 1 hit.
    PROSITEi PS00052. RIBOSOMAL_S7. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome Sequence of Oryctolagus cuniculus (European rabbit)."
      The Genome Sequencing Platform
      Di Palma F., Heiman D., Young S., Gnerre S., Johnson J., Lander E.S., Lindblad-Toh K.
      Submitted (AUG-2009) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ThorbeckeImported.
    2. "A high-resolution map of human evolutionary constraint using 29 mammals."
      Lindblad-Toh K., Garber M., Zuk O., Lin M.F., Parker B.J., Washietl S., Kheradpour P., Ernst J., Jordan G., Mauceli E., Ward L.D., Lowe C.B., Holloway A.K., Clamp M., Gnerre S., Alfoldi J., Beal K., Chang J.
      , Clawson H., Cuff J., Di Palma F., Fitzgerald S., Flicek P., Guttman M., Hubisz M.J., Jaffe D.B., Jungreis I., Kent W.J., Kostka D., Lara M., Martins A.L., Massingham T., Moltke I., Raney B.J., Rasmussen M.D., Robinson J., Stark A., Vilella A.J., Wen J., Xie X., Zody M.C., Baldwin J., Bloom T., Chin C.W., Heiman D., Nicol R., Nusbaum C., Young S., Wilkinson J., Worley K.C., Kovar C.L., Muzny D.M., Gibbs R.A., Cree A., Dihn H.H., Fowler G., Jhangiani S., Joshi V., Lee S., Lewis L.R., Nazareth L.V., Okwuonu G., Santibanez J., Warren W.C., Mardis E.R., Weinstock G.M., Wilson R.K., Delehaunty K., Dooling D., Fronik C., Fulton L., Fulton B., Graves T., Minx P., Sodergren E., Birney E., Margulies E.H., Herrero J., Green E.D., Haussler D., Siepel A., Goldman N., Pollard K.S., Pedersen J.S., Lander E.S., Kellis M.
      Nature 478:476-482(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ThorbeckeImported.
    3. Ensembl
      Submitted (SEP-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: ThorbeckeImported.
    4. "The initiation of mammalian protein synthesis and mRNA scanning mechanism."
      Lomakin I.B., Steitz T.A.
      Nature 500:307-311(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (7.01 ANGSTROMS).

    Entry informationi

    Entry nameiG1TFM5_RABIT
    AccessioniPrimary (citable) accession number: G1TFM5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 19, 2011
    Last sequence update: October 19, 2011
    Last modified: October 1, 2014
    This is version 24 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    3D-structureImported, Complete proteome, Reference proteomeImported

    External Data

    Dasty 3