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G1TDB3

- G1TDB3_RABIT

UniProt

G1TDB3 - G1TDB3_RABIT

Protein
Submitted name:

Uncharacterized protein

Gene

RPS25

Organism
Oryctolagus cuniculus (Rabbit)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
  1. Names & Taxonomyi

    Protein namesi
    Submitted name:
    Uncharacterized proteinImported
    Gene namesi
    Name:RPS25Imported
    OrganismiOryctolagus cuniculus (Rabbit)Imported
    Taxonomic identifieri9986 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresLagomorphaLeporidaeOryctolagus
    ProteomesiUP000001811: Unplaced

    Subcellular locationi

    GO - Cellular componenti

    1. cytosolic small ribosomal subunit Source: Ensembl
    2. nucleolus Source: Ensembl

    PTM / Processingi

    Proteomic databases

    PRIDEiG1TDB3.

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    4KZXX-ray7.81Z1-125[»]
    4KZYX-ray7.01Z1-125[»]
    4KZZX-ray7.03Z1-125[»]
    ProteinModelPortaliG1TDB3.
    SMRiG1TDB3. Positions 41-115.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00390000004856.
    OMAiQLIYTRS.
    OrthoDBiEOG722JC9.
    TreeFamiTF314909.

    Family and domain databases

    InterProiIPR004977. Ribosomal_S25.
    [Graphical view]
    PANTHERiPTHR12850. PTHR12850. 1 hit.
    PfamiPF03297. Ribosomal_S25. 1 hit.
    [Graphical view]
    ProDomiPD012268. Ribosomal_S25. 1 hit.
    [Graphical view] [Entries sharing at least one domain]

    Sequencei

    Sequence statusi: Complete.

    G1TDB3-1 [UniParc]FASTAAdd to Basket

    « Hide

    MPPKDDKKKK DAGKSAKKDK DPVNKSGGKA KKKKWSKGKV RDKLNNLVLF    50
    DKATYDKLCK EVPNYKLITP AVVSERLKIR GSLARAALQE LLSKGLIKLV 100
    SKHRAQVIYT RNTKGGDAPA AGEDA 125
    Length:125
    Mass (Da):13,742
    Last modified:October 19, 2011 - v1
    Checksum:iB8E05F04FCF2F1A9
    GO

    Sequence databases

    RefSeqiXP_002722751.1. XM_002722705.2.
    UniGeneiOcu.3397.

    Genome annotation databases

    EnsembliENSOCUT00000017253; ENSOCUP00000014824; ENSOCUG00000017256.
    GeneIDi100357444.

    Cross-referencesi

    Sequence databases

    RefSeqi XP_002722751.1. XM_002722705.2.
    UniGenei Ocu.3397.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    4KZX X-ray 7.81 Z 1-125 [» ]
    4KZY X-ray 7.01 Z 1-125 [» ]
    4KZZ X-ray 7.03 Z 1-125 [» ]
    ProteinModelPortali G1TDB3.
    SMRi G1TDB3. Positions 41-115.
    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PRIDEi G1TDB3.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSOCUT00000017253 ; ENSOCUP00000014824 ; ENSOCUG00000017256 .
    GeneIDi 100357444.

    Organism-specific databases

    CTDi 6230.

    Phylogenomic databases

    GeneTreei ENSGT00390000004856.
    OMAi QLIYTRS.
    OrthoDBi EOG722JC9.
    TreeFami TF314909.

    Family and domain databases

    InterProi IPR004977. Ribosomal_S25.
    [Graphical view ]
    PANTHERi PTHR12850. PTHR12850. 1 hit.
    Pfami PF03297. Ribosomal_S25. 1 hit.
    [Graphical view ]
    ProDomi PD012268. Ribosomal_S25. 1 hit.
    [Graphical view ] [Entries sharing at least one domain ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome Sequence of Oryctolagus cuniculus (European rabbit)."
      The Genome Sequencing Platform
      Di Palma F., Heiman D., Young S., Gnerre S., Johnson J., Lander E.S., Lindblad-Toh K.
      Submitted (AUG-2009) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ThorbeckeImported.
    2. "A high-resolution map of human evolutionary constraint using 29 mammals."
      Lindblad-Toh K., Garber M., Zuk O., Lin M.F., Parker B.J., Washietl S., Kheradpour P., Ernst J., Jordan G., Mauceli E., Ward L.D., Lowe C.B., Holloway A.K., Clamp M., Gnerre S., Alfoldi J., Beal K., Chang J.
      , Clawson H., Cuff J., Di Palma F., Fitzgerald S., Flicek P., Guttman M., Hubisz M.J., Jaffe D.B., Jungreis I., Kent W.J., Kostka D., Lara M., Martins A.L., Massingham T., Moltke I., Raney B.J., Rasmussen M.D., Robinson J., Stark A., Vilella A.J., Wen J., Xie X., Zody M.C., Baldwin J., Bloom T., Chin C.W., Heiman D., Nicol R., Nusbaum C., Young S., Wilkinson J., Worley K.C., Kovar C.L., Muzny D.M., Gibbs R.A., Cree A., Dihn H.H., Fowler G., Jhangiani S., Joshi V., Lee S., Lewis L.R., Nazareth L.V., Okwuonu G., Santibanez J., Warren W.C., Mardis E.R., Weinstock G.M., Wilson R.K., Delehaunty K., Dooling D., Fronik C., Fulton L., Fulton B., Graves T., Minx P., Sodergren E., Birney E., Margulies E.H., Herrero J., Green E.D., Haussler D., Siepel A., Goldman N., Pollard K.S., Pedersen J.S., Lander E.S., Kellis M.
      Nature 478:476-482(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ThorbeckeImported.
    3. Ensembl
      Submitted (SEP-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: ThorbeckeImported.
    4. "The initiation of mammalian protein synthesis and mRNA scanning mechanism."
      Lomakin I.B., Steitz T.A.
      Nature 500:307-311(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (7.01 ANGSTROMS).

    Entry informationi

    Entry nameiG1TDB3_RABIT
    AccessioniPrimary (citable) accession number: G1TDB3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 19, 2011
    Last sequence update: October 19, 2011
    Last modified: October 1, 2014
    This is version 22 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    3D-structureImported, Complete proteome, Reference proteomeImported

    External Data

    Dasty 3