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Protein
Submitted name:

Pentraxin 3

Gene

PTX3

Organism
Oryctolagus cuniculus (Rabbit)
Status
Unreviewed-Annotation score: Annotation score: 3 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
Pentraxin 3Imported
Gene namesi
Name:PTX3Imported
OrganismiOryctolagus cuniculus (Rabbit)Imported
Taxonomic identifieri9986 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresLagomorphaLeporidaeOryctolagus
Proteomesi
  • UP000001811 Componenti: Chromosome 14

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 17Sequence analysisAdd BLAST17
ChainiPRO_500342186418 – 381Sequence analysisAdd BLAST364

Expressioni

Gene expression databases

BgeeiENSOCUG00000010142.

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi9986.ENSOCUP00000008736.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini205 – 346LamGLInterPro annotationAdd BLAST142

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili142 – 162Sequence analysisAdd BLAST21

Keywords - Domaini

Coiled coilSequence analysis, SignalSequence analysis

Phylogenomic databases

eggNOGiENOG410IHCT. Eukaryota.
ENOG410XRG6. LUCA.
GeneTreeiENSGT00760000119128.
InParanoidiG1SYN4.
OMAiWLPAGCE.
OrthoDBiEOG091G0AHP.
TreeFamiTF330208.

Family and domain databases

InterProiView protein in InterPro
IPR013320. ConA-like_dom_sf.
IPR006558. LamG-like.
IPR030476. Pentaxin_CS.
IPR001759. Pentraxin-related.
PfamiView protein in Pfam
PF00354. Pentaxin. 1 hit.
PRINTSiPR00895. PENTAXIN.
SMARTiView protein in SMART
SM00560. LamGL. 1 hit.
SM00159. PTX. 1 hit.
SUPFAMiSSF49899. SSF49899. 1 hit.
PROSITEiView protein in PROSITE
PS00289. PTX_1. 1 hit.
PS51828. PTX_2. 1 hit.

Sequencei

Sequence statusi: Complete.

G1SYN4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQLLAVLLGA LWTAALAEDS HDYELMYLNL DNEIDNGLHP TEEPTPCDCG
60 70 80 90 100
PEHSEWDKLF VMLENSQMRE GMLLQATDEV LRGELQRLRA ELGRLAGSLA
110 120 130 140 150
RPCAPAASWE ARLARALDEL LPASRDAGRR LARLEDAEAR RREEAESALG
160 170 180 190 200
AVLEELRRTR ADLRAVQDWA TGRWLPAGCE TAILFPMRSK KIFGSVHPVR
210 220 230 240 250
PMKLESFSAC IWVKATDVLN KTILFSYGTK RNPYEIQLYL SHQSIVFVVG
260 270 280 290 300
GEENKLVADT VVSLGRWTHL CSTWDSASGR VTLWVHGEQV ATSVDVAAGH
310 320 330 340 350
VVPEGGILQL GQEKNGCCVG GGFDETLSFS GRLTGFNIWD RVLSNEEIGE
360 370 380
SGGAESCHIR GNVVGWGVTE IQPHGGAQYV S
Length:381
Mass (Da):41,877
Last modified:October 19, 2011 - v1
Checksum:i815DE2A3FC792D8F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAGW02014847 Genomic DNA. No translation available.
RefSeqiXP_002716374.1. XM_002716328.3.

Genome annotation databases

EnsembliENSOCUT00000010138; ENSOCUP00000008736; ENSOCUG00000010142.
GeneIDi100343665.
KEGGiocu:100343665.

Similar proteinsi

Entry informationi

Entry nameiG1SYN4_RABIT
AccessioniPrimary (citable) accession number: G1SYN4
Entry historyiIntegrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: December 20, 2017
This is version 39 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

Lacks conserved residue(s) required for the propagation of feature annotation.PROSITE-ProRule annotation
The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported