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G1SP51

- G1SP51_RABIT

UniProt

G1SP51 - G1SP51_RABIT

Protein
Submitted name:

Uncharacterized protein

Gene

RPS13

Organism
Oryctolagus cuniculus (Rabbit)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
  1. Functioni

    GO - Molecular functioni

    1. mRNA binding Source: Ensembl
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. negative regulation of RNA splicing Source: Ensembl
    2. translation Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Uncharacterized proteinImported
    Gene namesi
    Name:RPS13Imported
    OrganismiOryctolagus cuniculus (Rabbit)Imported
    Taxonomic identifieri9986 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresLagomorphaLeporidaeOryctolagus
    ProteomesiUP000001811: Unplaced

    Subcellular locationi

    GO - Cellular componenti

    1. cytosolic small ribosomal subunit Source: Ensembl
    2. nucleolus Source: Ensembl

    PTM / Processingi

    Proteomic databases

    PRIDEiG1SP51.

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    4KZXX-ray7.81N1-151[»]
    4KZYX-ray7.01N1-151[»]
    4KZZX-ray7.03N1-151[»]
    ProteinModelPortaliG1SP51.
    SMRiG1SP51. Positions 2-151.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00390000017491.
    OMAiHRCCALC.
    OrthoDBiEOG7KH9MB.
    TreeFamiTF300190.

    Family and domain databases

    HAMAPiMF_01343_A. Ribosomal_S15_A.
    InterProiIPR012606. Ribosomal_S13/S15_N.
    IPR000589. Ribosomal_S15.
    IPR023029. Ribosomal_S15P.
    IPR009068. S15_NS1_RNA-bd.
    [Graphical view]
    PfamiPF08069. Ribosomal_S13_N. 1 hit.
    PF00312. Ribosomal_S15. 1 hit.
    [Graphical view]
    SUPFAMiSSF47060. SSF47060. 1 hit.
    PROSITEiPS00362. RIBOSOMAL_S15. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    G1SP51-1 [UniParc]FASTAAdd to Basket

    « Hide

    MGRMHAPGKG LSQSALPYRR SVPTWLKLTS DDVKEQIYKL AKKGLTPSQI    50
    GVILRDSHGV AQVRFVTGNK ILRILKSKGL APDLPEDLYH LIKKAVAVRK 100
    HLERNRKDKD AKFRLILIES RIHRLARYYK TKRVLPPNWK YESSTASALV 150
    A 151
    Length:151
    Mass (Da):17,222
    Last modified:October 19, 2011 - v1
    Checksum:i23F94D38F87B8D53
    GO

    Sequence databases

    RefSeqiXP_002721403.1. XM_002721357.2.
    UniGeneiOcu.3534.

    Genome annotation databases

    EnsembliENSOCUT00000005534; ENSOCUP00000004803; ENSOCUG00000005536.
    GeneIDi100340445.

    Cross-referencesi

    Sequence databases

    RefSeqi XP_002721403.1. XM_002721357.2.
    UniGenei Ocu.3534.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    4KZX X-ray 7.81 N 1-151 [» ]
    4KZY X-ray 7.01 N 1-151 [» ]
    4KZZ X-ray 7.03 N 1-151 [» ]
    ProteinModelPortali G1SP51.
    SMRi G1SP51. Positions 2-151.
    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PRIDEi G1SP51.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSOCUT00000005534 ; ENSOCUP00000004803 ; ENSOCUG00000005536 .
    GeneIDi 100340445.

    Organism-specific databases

    CTDi 6207.

    Phylogenomic databases

    GeneTreei ENSGT00390000017491.
    OMAi HRCCALC.
    OrthoDBi EOG7KH9MB.
    TreeFami TF300190.

    Family and domain databases

    HAMAPi MF_01343_A. Ribosomal_S15_A.
    InterProi IPR012606. Ribosomal_S13/S15_N.
    IPR000589. Ribosomal_S15.
    IPR023029. Ribosomal_S15P.
    IPR009068. S15_NS1_RNA-bd.
    [Graphical view ]
    Pfami PF08069. Ribosomal_S13_N. 1 hit.
    PF00312. Ribosomal_S15. 1 hit.
    [Graphical view ]
    SUPFAMi SSF47060. SSF47060. 1 hit.
    PROSITEi PS00362. RIBOSOMAL_S15. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome Sequence of Oryctolagus cuniculus (European rabbit)."
      The Genome Sequencing Platform
      Di Palma F., Heiman D., Young S., Gnerre S., Johnson J., Lander E.S., Lindblad-Toh K.
      Submitted (AUG-2009) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ThorbeckeImported.
    2. "A high-resolution map of human evolutionary constraint using 29 mammals."
      Lindblad-Toh K., Garber M., Zuk O., Lin M.F., Parker B.J., Washietl S., Kheradpour P., Ernst J., Jordan G., Mauceli E., Ward L.D., Lowe C.B., Holloway A.K., Clamp M., Gnerre S., Alfoldi J., Beal K., Chang J.
      , Clawson H., Cuff J., Di Palma F., Fitzgerald S., Flicek P., Guttman M., Hubisz M.J., Jaffe D.B., Jungreis I., Kent W.J., Kostka D., Lara M., Martins A.L., Massingham T., Moltke I., Raney B.J., Rasmussen M.D., Robinson J., Stark A., Vilella A.J., Wen J., Xie X., Zody M.C., Baldwin J., Bloom T., Chin C.W., Heiman D., Nicol R., Nusbaum C., Young S., Wilkinson J., Worley K.C., Kovar C.L., Muzny D.M., Gibbs R.A., Cree A., Dihn H.H., Fowler G., Jhangiani S., Joshi V., Lee S., Lewis L.R., Nazareth L.V., Okwuonu G., Santibanez J., Warren W.C., Mardis E.R., Weinstock G.M., Wilson R.K., Delehaunty K., Dooling D., Fronik C., Fulton L., Fulton B., Graves T., Minx P., Sodergren E., Birney E., Margulies E.H., Herrero J., Green E.D., Haussler D., Siepel A., Goldman N., Pollard K.S., Pedersen J.S., Lander E.S., Kellis M.
      Nature 478:476-482(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ThorbeckeImported.
    3. Ensembl
      Submitted (SEP-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: ThorbeckeImported.
    4. "The initiation of mammalian protein synthesis and mRNA scanning mechanism."
      Lomakin I.B., Steitz T.A.
      Nature 500:307-311(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (7.01 ANGSTROMS).

    Entry informationi

    Entry nameiG1SP51_RABIT
    AccessioniPrimary (citable) accession number: G1SP51
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 19, 2011
    Last sequence update: October 19, 2011
    Last modified: October 1, 2014
    This is version 24 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    3D-structureImported, Complete proteome, Reference proteomeImported

    External Data

    Dasty 3