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G1SFR8

- G1SFR8_RABIT

UniProt

G1SFR8 - G1SFR8_RABIT

Protein

40S ribosomal protein S12

Gene

RPS12

Organism
Oryctolagus cuniculus (Rabbit)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
  1. Functioni

    GO - Molecular functioni

    1. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal proteinUniRule annotation

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    40S ribosomal protein S12UniRule annotation
    Gene namesi
    Name:RPS12Imported
    OrganismiOryctolagus cuniculus (Rabbit)Imported
    Taxonomic identifieri9986 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresLagomorphaLeporidaeOryctolagus
    ProteomesiUP000001811: Chromosome 12

    Subcellular locationi

    GO - Cellular componenti

    1. cytosolic small ribosomal subunit Source: Ensembl

    PTM / Processingi

    Proteomic databases

    PRIDEiG1SFR8.

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    4KZXX-ray7.81M1-132[»]
    4KZYX-ray7.01M1-132[»]
    4KZZX-ray7.03M1-132[»]
    ProteinModelPortaliG1SFR8.
    SMRiG1SFR8. Positions 9-132.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein S12e family.UniRule annotation

    Phylogenomic databases

    GeneTreeiENSGT00390000018318.
    OMAiHESGFEF.
    OrthoDBiEOG7H1JP3.
    TreeFamiTF300196.

    Family and domain databases

    Gene3Di3.30.1330.30. 1 hit.
    InterProiIPR029064. L30e-like.
    IPR004038. Ribosomal_L7Ae/L30e/S12e/Gad45.
    IPR000530. Ribosomal_S12e.
    [Graphical view]
    PANTHERiPTHR11843. PTHR11843. 1 hit.
    PfamiPF01248. Ribosomal_L7Ae. 1 hit.
    [Graphical view]
    PRINTSiPR00972. RIBSOMALS12E.
    SUPFAMiSSF55315. SSF55315. 1 hit.
    PROSITEiPS01189. RIBOSOMAL_S12E. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    G1SFR8-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAEEGIAAGG VMDVNTALQE VLKTALIHDG LARGIREAAK ALDKRQAHLC    50
    VLASNCDEPM YVKLVEALCA EHQINLIKVD DNKKLGEWVG LCKIDREGKP 100
    RKVVGCSCVV VKDYGKESQA KDVIEEYFKC KK 132
    Length:132
    Mass (Da):14,515
    Last modified:October 19, 2011 - v1
    Checksum:i45AD1274D55FFA25
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AAGW02028778 Genomic DNA. No translation available.
    RefSeqiXP_002714875.1. XM_002714829.2.
    UniGeneiOcu.3562.

    Genome annotation databases

    EnsembliENSOCUT00000001606; ENSOCUP00000001378; ENSOCUG00000001606.
    GeneIDi100345945.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AAGW02028778 Genomic DNA. No translation available.
    RefSeqi XP_002714875.1. XM_002714829.2.
    UniGenei Ocu.3562.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    4KZX X-ray 7.81 M 1-132 [» ]
    4KZY X-ray 7.01 M 1-132 [» ]
    4KZZ X-ray 7.03 M 1-132 [» ]
    ProteinModelPortali G1SFR8.
    SMRi G1SFR8. Positions 9-132.
    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PRIDEi G1SFR8.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSOCUT00000001606 ; ENSOCUP00000001378 ; ENSOCUG00000001606 .
    GeneIDi 100345945.

    Organism-specific databases

    CTDi 6206.

    Phylogenomic databases

    GeneTreei ENSGT00390000018318.
    OMAi HESGFEF.
    OrthoDBi EOG7H1JP3.
    TreeFami TF300196.

    Family and domain databases

    Gene3Di 3.30.1330.30. 1 hit.
    InterProi IPR029064. L30e-like.
    IPR004038. Ribosomal_L7Ae/L30e/S12e/Gad45.
    IPR000530. Ribosomal_S12e.
    [Graphical view ]
    PANTHERi PTHR11843. PTHR11843. 1 hit.
    Pfami PF01248. Ribosomal_L7Ae. 1 hit.
    [Graphical view ]
    PRINTSi PR00972. RIBSOMALS12E.
    SUPFAMi SSF55315. SSF55315. 1 hit.
    PROSITEi PS01189. RIBOSOMAL_S12E. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome Sequence of Oryctolagus cuniculus (European rabbit)."
      The Genome Sequencing Platform
      Di Palma F., Heiman D., Young S., Gnerre S., Johnson J., Lander E.S., Lindblad-Toh K.
      Submitted (AUG-2009) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ThorbeckeImported.
    2. "A high-resolution map of human evolutionary constraint using 29 mammals."
      Lindblad-Toh K., Garber M., Zuk O., Lin M.F., Parker B.J., Washietl S., Kheradpour P., Ernst J., Jordan G., Mauceli E., Ward L.D., Lowe C.B., Holloway A.K., Clamp M., Gnerre S., Alfoldi J., Beal K., Chang J.
      , Clawson H., Cuff J., Di Palma F., Fitzgerald S., Flicek P., Guttman M., Hubisz M.J., Jaffe D.B., Jungreis I., Kent W.J., Kostka D., Lara M., Martins A.L., Massingham T., Moltke I., Raney B.J., Rasmussen M.D., Robinson J., Stark A., Vilella A.J., Wen J., Xie X., Zody M.C., Baldwin J., Bloom T., Chin C.W., Heiman D., Nicol R., Nusbaum C., Young S., Wilkinson J., Worley K.C., Kovar C.L., Muzny D.M., Gibbs R.A., Cree A., Dihn H.H., Fowler G., Jhangiani S., Joshi V., Lee S., Lewis L.R., Nazareth L.V., Okwuonu G., Santibanez J., Warren W.C., Mardis E.R., Weinstock G.M., Wilson R.K., Delehaunty K., Dooling D., Fronik C., Fulton L., Fulton B., Graves T., Minx P., Sodergren E., Birney E., Margulies E.H., Herrero J., Green E.D., Haussler D., Siepel A., Goldman N., Pollard K.S., Pedersen J.S., Lander E.S., Kellis M.
      Nature 478:476-482(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ThorbeckeImported.
    3. Ensembl
      Submitted (SEP-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: ThorbeckeImported.
    4. "The initiation of mammalian protein synthesis and mRNA scanning mechanism."
      Lomakin I.B., Steitz T.A.
      Nature 500:307-311(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (7.01 ANGSTROMS).

    Entry informationi

    Entry nameiG1SFR8_RABIT
    AccessioniPrimary (citable) accession number: G1SFR8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 19, 2011
    Last sequence update: October 19, 2011
    Last modified: October 1, 2014
    This is version 24 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    3D-structureImported, Complete proteome, Reference proteomeImported

    External Data

    Dasty 3