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Protein
Submitted name:

SRY-box 17

Gene

SOX17

Organism
Nomascus leucogenys (Northern white-cheeked gibbon) (Hylobates leucogenys)
Status
Unreviewed-Annotation score: Annotation score: 5 out of 5-Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi68 – 136HMG boxPROSITE-ProRule annotationAdd BLAST69

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
SRY-box 17Imported
Gene namesi
Name:SOX17Imported
OrganismiNomascus leucogenys (Northern white-cheeked gibbon) (Hylobates leucogenys)Imported
Taxonomic identifieri61853 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHylobatidaeNomascus
Proteomesi
  • UP000001073 Componenti: Unplaced

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotation

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi61853.ENSNLEP00000001270.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini68 – 136HMG boxInterPro annotationAdd BLAST69
Domaini280 – 409Sox C-terminalInterPro annotationAdd BLAST130

Phylogenomic databases

eggNOGiENOG410IPZH. Eukaryota.
ENOG41114B8. LUCA.
GeneTreeiENSGT00760000118988.
InParanoidiG1QK25.
KOiK04495.
OMAiHMGGHYR.
OrthoDBiEOG091G0CYU.

Family and domain databases

Gene3Di1.10.30.10. 1 hit.
InterProiView protein in InterPro
IPR009071. HMG_box_dom.
IPR036910. HMG_box_dom_sf.
IPR033392. Sox7/17/18_central.
IPR021934. Sox_C.
PfamiView protein in Pfam
PF00505. HMG_box. 1 hit.
PF12067. Sox17_18_mid. 1 hit.
SMARTiView protein in SMART
SM00398. HMG. 1 hit.
SUPFAMiSSF47095. SSF47095. 1 hit.
PROSITEiView protein in PROSITE
PS50118. HMG_BOX_2. 1 hit.
PS51516. SOX_C. 1 hit.

Sequencei

Sequence statusi: Complete.

G1QK25-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSPDAGYAS DDQSQTRSAL PAVMAGLGPC PWAESLSPIG DMKVKGEAPA
60 70 80 90 100
SSGAPAGAAG RAKGESRIRR PMNAFMVWAK DERKRLAQQN PDLHNAELSK
110 120 130 140 150
MLGKSWKALT LAEKRPLVEE PERLRVQHMQ DHPNYKYRPR RRKQVKRLKR
160 170 180 190 200
VEGGFLHGLA EPQAAALGPE GGRVAIDGLG LQFPEQGFPA GPPLLPPHMG
210 220 230 240 250
GHYRDCQSLG APPLDGYPLP TPDTSPLDGV DPDPAFFAAP MPGDCPASGT
260 270 280 290 300
YSYAQVSEYA GPPEPPAGPM HPRLGPEPAG PSIPGLLAPP SALHMYYGAM
310 320 330 340 350
GSPGAGGGRG FQMQPQHQHQ HHPPGPGQPS PPPEALPCRD GTDPNPPAEL
360 370 380 390 400
LGEVDRTEFE QYLHFVCKPE MGLPYQGHDS GVNLPDSHGA ISSVVSDASS
410
AVYYCNYPDV
Length:410
Mass (Da):43,619
Last modified:October 19, 2011 - v1
Checksum:i03E461D4D9FD9270
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
ADFV01167137 Genomic DNA. No translation available.
RefSeqiXP_003256014.1. XM_003255966.2.

Genome annotation databases

EnsembliENSNLET00000001345; ENSNLEP00000001270; ENSNLEG00000001085.
GeneIDi100591356.
KEGGinle:100591356.

Similar proteinsi

Entry informationi

Entry nameiG1QK25_NOMLE
AccessioniPrimary (citable) accession number: G1QK25
Entry historyiIntegrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: January 31, 2018
This is version 36 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported