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Protein
Submitted name:

Uncharacterized protein

Gene

ALKBH1

Organism
Meleagris gallopavo (Common turkey)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. chemoattractant activity Source: Ensembl
  2. DNA-(apurinic or apyrimidinic site) lyase activity Source: Ensembl
  3. ferrous iron binding Source: Ensembl
  4. methylcytosine dioxygenase activity Source: Ensembl

GO - Biological processi

  1. developmental growth Source: Ensembl
  2. DNA dealkylation involved in DNA repair Source: Ensembl
  3. DNA demethylation Source: Ensembl
  4. negative regulation of neuron apoptotic process Source: Ensembl
  5. neuron migration Source: Ensembl
  6. neuron projection development Source: Ensembl
  7. oxidative demethylation Source: Ensembl
  8. RNA repair Source: Ensembl
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:ALKBH1Imported
OrganismiMeleagris gallopavo (Common turkey)Imported
Taxonomic identifieri9103 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiArchelosauriaArchosauriaDinosauriaSaurischiaTheropodaCoelurosauriaAvesNeognathaeGalloanseraeGalliformesPhasianidaeMeleagridinaeMeleagris
ProteomesiUP000001645: Chromosome 5

Subcellular locationi

GO - Cellular componenti

  1. mitochondrion Source: Ensembl
  2. nuclear euchromatin Source: Ensembl
Complete GO annotation...

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00390000004599.
InParanoidiG1NJS0.
OMAiGFCHLDD.
OrthoDBiEOG71P2CK.
TreeFamiTF314609.

Family and domain databases

Gene3Di2.60.120.590. 2 hits.
InterProiIPR027450. AlkB-like.
IPR005123. Oxoglu/Fe-dep_dioxygenase.
[Graphical view]
PfamiPF13532. 2OG-FeII_Oxy_2. 1 hit.
[Graphical view]
PROSITEiPS51471. FE2OG_OXY. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

G1NJS0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
QVFRSQLSVS SVSDQDACRA GLQPVSRWKA YGLNGYPGFI FIQNPFLPGC
60 70 80 90 100
QRHWVKQCLK LYTQKPNVCN LDLHMAPEKT ADLWGQSKEK LRRKGSSKCE
110 120 130 140 150
PRSLLEKLRW VTLGYHYNWD TKKYSANHHT PFPSDLAFLS EQVAAACGFR
160 170 180 190 200
GFQAQAGILN YYHFDSSLGI HVDESELDHS HPLLSFSFGQ SSIFLLGGLK
210 220 230 240 250
REEAPTAMFM HSGDIMVMSG FSRLLYHAVP RVLPNPEGTA LPSCLDQALS
260 270 280 290 300
TDLPVGSVIE HSSDEDWQVC AKYLQSSRIN MTIRQVLAEG QKFPEESGTN
310 320
TESRVPSEDG HHQENSRAKR HKPNTDS
Length:327
Mass (Da):36,755
Last modified:October 19, 2011 - v1
Checksum:i8C07E4A85D61A580
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Genome annotation databases

EnsembliENSMGAT00000014520; ENSMGAP00000013608; ENSMGAG00000012910.

Cross-referencesi

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMGAT00000014520; ENSMGAP00000013608; ENSMGAG00000012910.

Phylogenomic databases

GeneTreeiENSGT00390000004599.
InParanoidiG1NJS0.
OMAiGFCHLDD.
OrthoDBiEOG71P2CK.
TreeFamiTF314609.

Family and domain databases

Gene3Di2.60.120.590. 2 hits.
InterProiIPR027450. AlkB-like.
IPR005123. Oxoglu/Fe-dep_dioxygenase.
[Graphical view]
PfamiPF13532. 2OG-FeII_Oxy_2. 1 hit.
[Graphical view]
PROSITEiPS51471. FE2OG_OXY. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis."
    Dalloul R.A., Long J.A., Zimin A.V., Aslam L., Beal K., Blomberg L.A., Bouffard P., Burt D.W., Crasta O., Crooijmans R.P., Cooper K., Coulombe R.A., De S., Delany M.E., Dodgson J.B., Dong J.J., Evans C., Frederickson K.M.
    , Flicek P., Florea L., Folkerts O., Groenen M.A., Harkins T.T., Herrero J., Hoffmann S., Megens H.J., Jiang A., de Jong P., Kaiser P., Kim H., Kim K.W., Kim S., Langenberger D., Lee M.K., Lee T., Mane S., Marcais G., Marz M., McElroy A.P., Modise T., Nefedov M., Notredame C., Paton I.R., Payne W.S., Pertea G., Prickett D., Puiu D., Qioa D., Raineri E., Ruffier M., Salzberg S.L., Schatz M.C., Scheuring C., Schmidt C.J., Schroeder S., Searle S.M., Smith E.J., Smith J., Sonstegard T.S., Stadler P.F., Tafer H., Tu Z.J., Van Tassell C.P., Vilella A.J., Williams K.P., Yorke J.A., Zhang L., Zhang H.B., Zhang X., Zhang Y., Reed K.M.
    PLoS Biol. 8:E1000475-E1000475(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  2. Ensembl
    Submitted (SEP-2011) to UniProtKB
    Cited for: IDENTIFICATION.

Entry informationi

Entry nameiG1NJS0_MELGA
AccessioniPrimary (citable) accession number: G1NJS0
Entry historyi
Integrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: February 4, 2015
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.