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Protein
Submitted name:

Uncharacterized protein

Gene

DDX52

Organism
Ailuropoda melanoleuca (Giant panda)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. helicase activity Source: UniProtKB-KW
  3. poly(A) RNA binding Source: Ensembl
Complete GO annotation...

Keywords - Molecular functioni

HelicaseUniRule annotation, Hydrolase

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:DDX52Imported
OrganismiAiluropoda melanoleuca (Giant panda)Imported
Taxonomic identifieri9646 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCarnivoraCaniformiaUrsidaeAiluropoda
ProteomesiUP000008912: Unplaced

Subcellular locationi

GO - Cellular componenti

  1. membrane Source: Ensembl
  2. nucleolus Source: Ensembl
Complete GO annotation...

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00550000074863.
InParanoidiG1M3J1.
KOiK14779.
OMAiMDFKGVR.
OrthoDBiEOG7H1JKD.
TreeFamiTF314448.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR011545. DEAD/DEAH_box_helicase_dom.
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR027417. P-loop_NTPase.
IPR014014. RNA_helicase_DEAD_Q_motif.
[Graphical view]
PfamiPF00270. DEAD. 1 hit.
PF00271. Helicase_C. 1 hit.
[Graphical view]
SMARTiSM00487. DEXDc. 1 hit.
SM00490. HELICc. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
PROSITEiPS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
PS51195. Q_MOTIF. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G1M3J1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDAHDLFRRL GAGAKFDVRR FSADAARFQV GKRKHEFDSS EVLQGLDFFG
60 70 80 90 100
NKKSVPGECG ASRTHQELQD EEKKEESLTE RKREQKKKRK MMMSEITSQE
110 120 130 140 150
EGSTIQWISS VEAKIEDKKI KRENKLTSGK LENLRKEKIN FFRNKHKIHV
160 170 180 190 200
QGTDLPDPIA TFQQLDQEYK INSRLLQNIL DAGFQMPTPI QMQAIPVMLH
210 220 230 240 250
GRELLASAPT GSGKTLAFSI PILMHLKQPT NKGFRALIIS PTRELANQIH
260 270 280 290 300
RELVKISEGT GFRIHMIHKA AVAAKKFGPK SSQKFDILVT TPNRLIYLLK
310 320 330 340 350
QDPPGIDLTS VEWLVVDESD KLFEDGKTGF RDQLASIFLA CTSHKVRRAM
360 370 380 390 400
FSATFAYDVE QWCKLNLDNV ITVSIGARNS AAETVEQELL FVGSETGKLL
410 420 430 440 450
AMRELVKKGF NPPVLVFVQS IERAKELFHE LIYEGINVDV IHADRTQQQR
460 470 480 490 500
DNTVHSFRAG KIWVLICTAL LARGIDFKGV NLVINYDFPT SSVEYIHRIG
510 520 530 540 550
RTGRAGHKGK AVTFFTEDDK PLLRSVANVI QQAGCPVPEY IKGFQKLLSK
560 570 580 590
QKKKMIKKPL ERDSISTTPK YFLEKAENKR KKVTGQNSKK KAALEDKS
Length:598
Mass (Da):67,775
Last modified:October 19, 2011 - v1
Checksum:i64F3202E98A57C99
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
ACTA01108365 Genomic DNA. No translation available.
RefSeqiXP_002924934.1. XM_002924888.1.

Genome annotation databases

EnsembliENSAMET00000014481; ENSAMEP00000013903; ENSAMEG00000013159.
GeneIDi100472790.
KEGGiaml:100472790.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
ACTA01108365 Genomic DNA. No translation available.
RefSeqiXP_002924934.1. XM_002924888.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSAMET00000014481; ENSAMEP00000013903; ENSAMEG00000013159.
GeneIDi100472790.
KEGGiaml:100472790.

Organism-specific databases

CTDi11056.

Phylogenomic databases

GeneTreeiENSGT00550000074863.
InParanoidiG1M3J1.
KOiK14779.
OMAiMDFKGVR.
OrthoDBiEOG7H1JKD.
TreeFamiTF314448.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR011545. DEAD/DEAH_box_helicase_dom.
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR027417. P-loop_NTPase.
IPR014014. RNA_helicase_DEAD_Q_motif.
[Graphical view]
PfamiPF00270. DEAD. 1 hit.
PF00271. Helicase_C. 1 hit.
[Graphical view]
SMARTiSM00487. DEXDc. 1 hit.
SM00490. HELICc. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
PROSITEiPS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
PS51195. Q_MOTIF. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The sequence and de novo assembly of the giant panda genome."
    Li R., Fan W., Tian G., Zhu H., He L., Cai J., Huang Q., Cai Q., Li B., Bai Y., Zhang Z., Zhang Y., Wang W., Li J., Wei F., Li H., Jian M., Li J.
    , Zhang Z., Nielsen R., Li D., Gu W., Yang Z., Xuan Z., Ryder O.A., Leung F.C., Zhou Y., Cao J., Sun X., Fu Y., Fang X., Guo X., Wang B., Hou R., Shen F., Mu B., Ni P., Lin R., Qian W., Wang G., Yu C., Nie W., Wang J., Wu Z., Liang H., Min J., Wu Q., Cheng S., Ruan J., Wang M., Shi Z., Wen M., Liu B., Ren X., Zheng H., Dong D., Cook K., Shan G., Zhang H., Kosiol C., Xie X., Lu Z., Zheng H., Li Y., Steiner C.C., Lam T.T., Lin S., Zhang Q., Li G., Tian J., Gong T., Liu H., Zhang D., Fang L., Ye C., Zhang J., Hu W., Xu A., Ren Y., Zhang G., Bruford M.W., Li Q., Ma L., Guo Y., An N., Hu Y., Zheng Y., Shi Y., Li Z., Liu Q., Chen Y., Zhao J., Qu N., Zhao S., Tian F., Wang X., Wang H., Xu L., Liu X., Vinar T., Wang Y., Lam T.W., Yiu S.M., Liu S., Zhang H., Li D., Huang Y., Wang X., Yang G., Jiang Z., Wang J., Qin N., Li L., Li J., Bolund L., Kristiansen K., Wong G.K., Olson M., Zhang X., Li S., Yang H., Wang J., Wang J.
    Nature 463:311-317(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  2. Ensembl
    Submitted (SEP-2011) to UniProtKB
    Cited for: IDENTIFICATION.

Entry informationi

Entry nameiG1M3J1_AILME
AccessioniPrimary (citable) accession number: G1M3J1
Entry historyi
Integrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: March 4, 2015
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.