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Protein
Submitted name:

PHD finger protein 21A

Gene

PHF21A

Organism
Ailuropoda melanoleuca (Giant panda)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
PHD finger protein 21AImported
Gene namesi
Name:PHF21AImported
OrganismiAiluropoda melanoleuca (Giant panda)Imported
Taxonomic identifieri9646 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCarnivoraCaniformiaUrsidaeAiluropoda
Proteomesi
  • UP000008912 Componenti: Unassembled WGS sequence

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Interactioni

Protein-protein interaction databases

STRINGi9646.ENSAMEP00000000630.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini436 – 483PHD-typeInterPro annotationAdd BLAST48

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili510 – 548Sequence analysisAdd BLAST39

Keywords - Domaini

Coiled coilSequence analysis, Zinc-fingerPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiKOG0383. Eukaryota.
COG0553. LUCA.
GeneTreeiENSGT00530000063984.
InParanoidiG1L178.
OMAiHEDFCTV.
OrthoDBiEOG091G03CB.
TreeFamiTF331518.

Family and domain databases

Gene3Di3.30.40.10. 1 hit.
InterProiView protein in InterPro
IPR019786. Zinc_finger_PHD-type_CS.
IPR011011. Znf_FYVE_PHD.
IPR001965. Znf_PHD.
IPR019787. Znf_PHD-finger.
IPR013083. Znf_RING/FYVE/PHD.
PfamiView protein in Pfam
PF00628. PHD. 1 hit.
SMARTiView protein in SMART
SM00249. PHD. 1 hit.
SUPFAMiSSF57903. SSF57903. 1 hit.
PROSITEiView protein in PROSITE
PS01359. ZF_PHD_1. 1 hit.
PS50016. ZF_PHD_2. 1 hit.

Sequencei

Sequence statusi: Complete.

G1L178-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
KRVVEQLRKN LIVKQEQPDK FQIQPLPQSE NKLQTAQQQP LQQLQQQQQY
60 70 80 90 100
HHHHAQSAAP SPNLTASQKT VTTASMITTK TLPLVLKAAT ATMPASVVGQ
110 120 130 140 150
RPTIAMVTAI NSQKAVLSTD VQNTPVNLQT SSKVTGPGAE AVQIVAKNTV
160 170 180 190 200
TLVQATPPQP IKVPQFIPPP RLTPRPNFLP QVRPKPVAQN NIPIAPAPPP
210 220 230 240 250
MLAAPQLIQR PVMLTKFTPT TLPTSQNSIH PVRVVNGQTA TIAKTFPMAQ
260 270 280 290 300
LTSIVIATPG TRLAGPQTVQ LSKPSLEKQT IKSHTETDEK QTESRTITPP
310 320 330 340 350
AAPKPKREEN PQKLAFMVSL GLVTHDHLEE IQSKRQERKR RTTANPVYSG
360 370 380 390 400
AVFEPERKKS AVTYLNSTMH PGTRKRGRPP KYNAVLGFGA LTPTSPPSSH
410 420 430 440 450
PDSPENEKTE TTFTFPAPVQ PVSLPSPTST DGDIHEDFCS VCRKSGQLLM
460 470 480 490 500
CDTCSRVYHL DCLDPPLKTI PKGMWICPRC QDQMLKKEEA IPWPGTLAIV
510 520 530 540 550
HSYIAYKAAK EEEKQKLLKW SSDLKQEREQ LEQKVKQLSN SISKCMEMKN
560 570 580 590 600
TILARQKEMH SSLEKVKQLI RLIHGIDLSK PVDSEATVGA VSNGPDCTPP
610 620
ANAATSTPAH SPSSQSCTAN CTQGDETK
Length:628
Mass (Da):68,858
Last modified:October 19, 2011 - v1
Checksum:i44B7001E5DA358D3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
ACTA01001024 Genomic DNA. No translation available.
ACTA01009024 Genomic DNA. No translation available.
ACTA01017024 Genomic DNA. No translation available.
ACTA01193011 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSAMET00000000651; ENSAMEP00000000630; ENSAMEG00000000598.

Similar proteinsi

Entry informationi

Entry nameiG1L178_AILME
AccessioniPrimary (citable) accession number: G1L178
Entry historyiIntegrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: August 30, 2017
This is version 38 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported