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G0VWZ0

- G0VWZ0_PAEPO

UniProt

G0VWZ0 - G0VWZ0_PAEPO

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Protein
Alanine racemase
Gene
alr, PPM_1196
Organism
Paenibacillus polymyxa M1
Status
Unreviewed - Annotation score: 2 out of 5 - Experimental evidence at protein leveli

Functioni

Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids By similarity.UniRule annotation

Catalytic activityi

L-alanine = D-alanine.UniRule annotationSAAS annotations

Cofactori

Pyridoxal phosphate By similarity.UniRule annotationSAAS annotations

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei39 – 391Proton acceptor; specific for D-alanine By similarityUniRule annotation
Binding sitei138 – 1381Substrate By similarityUniRule annotation
Active sitei269 – 2691Proton acceptor; specific for L-alanine By similarityUniRule annotation
Binding sitei317 – 3171Substrate; via amide nitrogen By similarityUniRule annotation

GO - Molecular functioni

  1. alanine racemase activity Source: UniProtKB-HAMAP
  2. pyridoxal phosphate binding Source: UniProtKB-HAMAP
Complete GO annotation...

GO - Biological processi

  1. D-alanine biosynthetic process Source: UniProtKB-UniPathway
Complete GO annotation...

Keywords - Molecular functioni

IsomeraseUniRule annotationSAAS annotationsImported

Keywords - Ligandi

Pyridoxal phosphateUniRule annotationSAAS annotations

Enzyme and pathway databases

BioCyciPPOL1052684:GLI7-1271-MONOMER.
UniPathwayiUPA00042; UER00497.

Names & Taxonomyi

Protein namesi
Recommended name:
Alanine racemaseUniRule annotation (EC:5.1.1.1UniRule annotation)
Gene namesi
Name:alrImported
ORF Names:PPM_1196Imported
OrganismiPaenibacillus polymyxa M1Imported
Taxonomic identifieri1052684 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesPaenibacillaceaePaenibacillus
ProteomesiUP000001644: Chromosome

PTM / Processingi

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei39 – 391N6-(pyridoxal phosphate)lysine By similarityUniRule annotation

Structurei

3D structure databases

ProteinModelPortaliG0VWZ0.

Family & Domainsi

Sequence similaritiesi

Belongs to the alanine racemase family.UniRule annotation

Phylogenomic databases

KOiK01775.

Family and domain databases

Gene3Di2.40.37.10. 1 hit.
3.20.20.10. 1 hit.
HAMAPiMF_01201. Ala_racemase.
InterProiIPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR020622. Ala_racemase_pyridoxalP-BS.
IPR029066. PLP-binding_barrel.
[Graphical view]
PfamiPF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PRINTSiPR00992. ALARACEMASE.
SMARTiSM01005. Ala_racemase_C. 1 hit.
[Graphical view]
SUPFAMiSSF50621. SSF50621. 1 hit.
SSF51419. SSF51419. 1 hit.
TIGRFAMsiTIGR00492. alr. 1 hit.
PROSITEiPS00395. ALANINE_RACEMASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G0VWZ0-1 [UniParc]FASTAAdd to Basket

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MQAQYRSTRA EINLDHLGAN YEAFRKVLPA DKLILVCVKA NAYGHGAVEI    50
SKEMERLGAD YLSVAFLDEA LELRHAGIEL PILVLGYTSP EAVQTAWEHD 100
ISLTVFSEEV LEGIRRLDRQ GSERKLKVHI KIDSGMGRLG LLPGEAALAF 150
VRQAHELEQV LLEGMYTHFA RADEEDKSYT LLQYDRFRGV ADALREQGIT 200
IPIIHTGNSA ATIDTPSLSP NMVRIGISIY GLYPSDEVNR QVIELLPVLS 250
LKTAVVYTKT LPPGWGVSYG TRYVTSSEER IGTLPIGYAD GYSRMLSGKV 300
EVLIRGRRVP VLGTICMDQC MVSLQSFAED AEEIQTGEEV VLIGQQSGEI 350
IAADELASKL GTIHYEVICM IADRVPRVYM RDHVPVVRVN SLLPTHWN 398
Length:398
Mass (Da):44,179
Last modified:October 19, 2011 - v1
Checksum:iE3F30C74B74E4C01
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
HE577054 Genomic DNA. Translation: CCC84133.1.
RefSeqiYP_005958840.1. NC_017542.1.

Genome annotation databases

EnsemblBacteriaiCCC84133; CCC84133; PPM_1196.
GeneIDi12549884.
KEGGippo:PPM_1196.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
HE577054 Genomic DNA. Translation: CCC84133.1 .
RefSeqi YP_005958840.1. NC_017542.1.

3D structure databases

ProteinModelPortali G0VWZ0.
ModBasei Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CCC84133 ; CCC84133 ; PPM_1196 .
GeneIDi 12549884.
KEGGi ppo:PPM_1196.

Phylogenomic databases

KOi K01775.

Enzyme and pathway databases

UniPathwayi UPA00042 ; UER00497 .
BioCyci PPOL1052684:GLI7-1271-MONOMER.

Family and domain databases

Gene3Di 2.40.37.10. 1 hit.
3.20.20.10. 1 hit.
HAMAPi MF_01201. Ala_racemase.
InterProi IPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR020622. Ala_racemase_pyridoxalP-BS.
IPR029066. PLP-binding_barrel.
[Graphical view ]
Pfami PF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view ]
PRINTSi PR00992. ALARACEMASE.
SMARTi SM01005. Ala_racemase_C. 1 hit.
[Graphical view ]
SUPFAMi SSF50621. SSF50621. 1 hit.
SSF51419. SSF51419. 1 hit.
TIGRFAMsi TIGR00492. alr. 1 hit.
PROSITEi PS00395. ALANINE_RACEMASE. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The Genome of the Plant Growth-Promoting Rhizobacterium Paenibacillus polymyxa M-1 Contains Nine Sites Dedicated to Nonribosomal Synthesis of Lipopeptides and Polyketides."
    Niu B., Rueckert C., Blom J., Wang Q., Borriss R.
    J. Bacteriol. 193:5862-5863(2011)
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: M1Imported.

Entry informationi

Entry nameiG0VWZ0_PAEPO
AccessioniPrimary (citable) accession number: G0VWZ0
Entry historyi
Integrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: September 3, 2014
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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