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Protein
Submitted name:

Uncharacterized protein

Gene

CAEBREN_30975

Organism
Caenorhabditis brenneri (Nematode worm)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

Keywordsi

Molecular functionIon channelUniRule annotation
Biological processIon transport, Transport

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
ORF Names:CAEBREN_30975Imported
OrganismiCaenorhabditis brenneri (Nematode worm)Imported
Taxonomic identifieri135651 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000008068 Componenti: Unassembled WGS sequence

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei262 – 284HelicalSequence analysisAdd BLAST23
Transmembranei293 – 311HelicalSequence analysisAdd BLAST19
Transmembranei323 – 347HelicalSequence analysisAdd BLAST25
Transmembranei368 – 398HelicalSequence analysisAdd BLAST31

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 17Sequence analysisAdd BLAST17
ChainiPRO_500340346918 – 401Sequence analysisAdd BLAST384

Interactioni

Protein-protein interaction databases

STRINGi135651.CBN30975.

Structurei

3D structure databases

ProteinModelPortaliG0MGR1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini39 – 260Neur_chan_LBDInterPro annotationAdd BLAST222

Sequence similaritiesi

Belongs to the ligand-gated ion channel (TC 1.A.9) family. [View classification]UniRule annotationSAAS annotation

Keywords - Domaini

SignalSequence analysis, Transmembrane, Transmembrane helixSequence analysisSAAS annotation

Phylogenomic databases

eggNOGiKOG3645. Eukaryota.
ENOG410XQGR. LUCA.
InParanoidiG0MGR1.
OrthoDBiEOG091G1E94.

Family and domain databases

Gene3Di1.20.58.390. 1 hit.
2.70.170.10. 1 hit.
InterProiView protein in InterPro
IPR006202. Neur_chan_lig-bd.
IPR036734. Neur_chan_lig-bd_sf.
IPR006201. Neur_channel.
IPR036719. Neuro-gated_channel_TM_sf.
IPR018000. Neurotransmitter_ion_chnl_CS.
PANTHERiPTHR18945. PTHR18945. 1 hit.
PfamiView protein in Pfam
PF02931. Neur_chan_LBD. 1 hit.
PRINTSiPR00252. NRIONCHANNEL.
SUPFAMiSSF63712. SSF63712. 1 hit.
SSF90112. SSF90112. 1 hit.
PROSITEiView protein in PROSITE
PS00236. NEUROTR_ION_CHANNEL. 1 hit.

Sequencei

Sequence statusi: Complete.

G0MGR1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLLLAALLTF FLQYTYTSNY NSGQYVPKWK QFLEHQSNLT VDLFADYDAT
60 70 80 90 100
ISPVYTKIDR TRPIGYDPEA PKRWNYSVFL YYLKLVEVLE PAEKVSVVLE
110 120 130 140 150
LMETWYDPRL EWNATANGNI TSIYARQDKV WSPTLSAFGV NEIIDFRDPD
160 170 180 190 200
FRLVSISYNG EVSDYLSVRV SANCRMDVSI FPFDTQTCQI YFCLPLFNRV
210 220 230 240 250
QVEVYNEIYD QILDESIVKH MGNSEWKLVN LTNRVELAKY NDNFGSMELA
260 270 280 290 300
VFEITLRRNP LYYIYMIVFP SFIINVISIL GVFLKNADKM SKLNVGLTNI
310 320 330 340 350
MTMTFILGVM ADKIPRTGNI PLLGIYIIVN LVIMILAIAV VTMITELRQW
360 370 380 390 400
ALPCLKPKKG SFSRKLETFL GAPMEYTCAI ILELLTTANF FVMIGFWFDD

L
Length:401
Mass (Da):46,324
Last modified:October 19, 2011 - v1
Checksum:iB79D49715EE56931
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GL379794 Genomic DNA. Translation: EGT57998.1.

Genome annotation databases

EnsemblMetazoaiCBN30975; CBN30975; WBGene00192940.

Similar proteinsi

Entry informationi

Entry nameiG0MGR1_CAEBE
AccessioniPrimary (citable) accession number: G0MGR1
Entry historyiIntegrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: October 25, 2017
This is version 32 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported