Skip Header

Contribute Send feedback
Read comments (?) or add your own

G0LKX0 (G0LKX0_HALWC) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 15. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
DNA ligase HAMAP-Rule MF_00407
EC=6.5.1.1 HAMAP-Rule MF_00407
Alternative name(s):
Polydeoxyribonucleotide synthase [ATP] HAMAP-Rule MF_00407
Gene names
Name:ligB1 EMBL CCC40410.1
Synonyms:lig HAMAP-Rule MF_00407
Ordered Locus Names:Hqrw_2571 EMBL CCC40410.1
OrganismHaloquadratum walsbyi (strain DSM 16854 / JCM 12705 / C23) [Complete proteome] [HAMAP] EMBL CCC40410.1
Taxonomic identifier768065 [NCBI]
Taxonomic lineageArchaea › Euryarchaeota › Halobacteria › Halobacteriales › Halobacteriaceae › Haloquadratum ›

Protein attributes

Sequence length618 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair By similarity. HAMAP-Rule MF_00407

Catalytic activity

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m). HAMAP-Rule MF_00407 RuleBase RU000617

Cofactor

Divalent metal cations By similarity. HAMAP-Rule MF_00407

Sequence similarities

Belongs to the ATP-dependent DNA ligase family. HAMAP-Rule MF_00407 RuleBase RU004196

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site2741N6-AMP-lysine intermediate By similarity HAMAP-Rule MF_00407
Binding site2721ATP By similarity HAMAP-Rule MF_00407
Binding site2791ATP By similarity HAMAP-Rule MF_00407
Binding site2941ATP By similarity HAMAP-Rule MF_00407
Binding site3241ATP By similarity HAMAP-Rule MF_00407
Binding site3671ATP By similarity HAMAP-Rule MF_00407
Binding site4721ATP By similarity HAMAP-Rule MF_00407
Binding site4781ATP By similarity HAMAP-Rule MF_00407

Sequences

Sequence LengthMass (Da)Tools
G0LKX0 [UniParc].

Last modified October 19, 2011. Version 1.
Checksum: 9A541CF94B3C8A1D

FASTA61868,156
        10         20         30         40         50         60 
MKYSELAEVY TDVAATSATT QKGTLLADCF LDVYNNTEKS LLPVTVRLVQ GRVFARWEAA 

        70         80         90        100        110        120 
EIGVSTAGAA DAISKATGVE SEQIETWWRE EGDLGDAAAY AVDDRVQQTL TATPLTVTRV 

       130        140        150        160        170        180 
YETLREVASY AGSGSQQKQR DEIAGLISDA SPLAARYIVR TVTGSMRLGV GEGIVRNALA 

       190        200        210        220        230        240 
SAFLDMSDDA ADAVQRAIDL TNDVAVVAQR VAEQGQPGLD DVDLELFRPI KPMLAKQAES 

       250        260        270        280        290        300 
IQTAVDELAA DPKHIERNHN IELSHSGAVL IEFKYDGIRA KIHRDGDEIR VYTRRLSDVT 

       310        320        330        340        350        360 
EQFPDVVSAA RDHIDAEHYI IEAELVGYDP QSNDDTPVTF QTLAQRIQRT DNVATIAKSI 

       370        380        390        400        410        420 
PVTTYVFDLL ALNGESLLTD TLEMRLERLN TILSTKATSD SKSASTHNAH SSTSVTTVSN 

       430        440        450        460        470        480 
DQYQSSSSLR RAQCTWATTQ TTATEFYEDA LAAGHEGVMI KNPTRPYQPG SRVGYQRKIK 

       490        500        510        520        530        540 
PTMEPLDLVV TRAKWSEGRK SDFLGRPYLA CRTADGNLAE VGRMHTGFTD DQLETFTNRV 

       550        560        570        580        590        600 
EPLIEHVEGR EATLTPAVVL AVEYEEIQIS STYDSGYALR FPRLKQIRHD CDPSQADSLE 

       610 
RVERLYEQQS LDESQTSV

« Hide

References

[1]"Haloquadratum walsbyi: limited diversity in a global pond."
Dyall-Smith M., Pfeiffer F., Klee K., Palm P., Gross K., Schuster S.C., Rampp M., Oesterhelt D.
PLoS ONE 6:e20968-e20968(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 16854 / JCM 12705 / C23.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		FR746099 Genomic DNA. Translation: CCC40410.1.
RefSeqYP_005840086.1. NC_017459.1.

3D structure databases

ProteinModelPortalG0LKX0.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCCC40410; CCC40410; Hqrw_2571.
GeneID12447293.
KEGGhwc:Hqrw_2571.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK10747.
OMAGAVKTTM.

Family and domain databases

Gene3D1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
HAMAPMF_00407. DNA_ligase.
InterProIPR022865. DNA_ligae_ATP-dep_bac/arc.
IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
SSF117018. SSF117018. 1 hit.
TIGRFAMsTIGR00574. dnl1. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameG0LKX0_HALWC
AccessionPrimary (citable) accession number: G0LKX0
Entry history
Integrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: April 3, 2013
This is version 15 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info