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Protein

Superoxide dismutase [Cu-Zn]

Gene

sodC

Organism
Zobellia galactanivorans (strain DSM 12802 / CIP 106680 / NCIMB 13871 / Dsij)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Destroys radicals which are normally produced within the cells and which are toxic to biological systems.UniRule annotation

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.UniRule annotation

Cofactori

Protein has several cofactor binding sites:
  • Cu cationUniRule annotationNote: Binds 1 copper ion per subunit.UniRule annotation
  • Zn2+UniRule annotationNote: Binds 1 zinc ion per subunit.UniRule annotation

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. superoxide dismutase activity Source: UniProtKB-EC
Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseUniRule annotationImported

Keywords - Ligandi

CopperUniRule annotation, Metal-bindingUniRule annotation, ZincUniRule annotation

Enzyme and pathway databases

BioCyciZGAL63186:GJN9-115-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutase [Cu-Zn]UniRule annotation (EC:1.15.1.1UniRule annotation)
Gene namesi
Name:sodCImported
Ordered Locus Names:zobellia_114Imported
OrganismiZobellia galactanivorans (strain DSM 12802 / CIP 106680 / NCIMB 13871 / Dsij)Imported
Taxonomic identifieri63186 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceaeZobellia
ProteomesiUP000008898: Chromosome

Structurei

3D structure databases

ProteinModelPortaliG0L8V2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the Cu-Zn superoxide dismutase family.UniRule annotation

Phylogenomic databases

KOiK04565.
OMAiDGKTHGA.

Family and domain databases

Gene3Di2.60.40.200. 1 hit.
InterProiIPR018152. SOD_Cu/Zn_BS.
IPR001424. SOD_Cu_Zn_dom.
[Graphical view]
PfamiPF00080. Sod_Cu. 1 hit.
[Graphical view]
SUPFAMiSSF49329. SSF49329. 1 hit.
PROSITEiPS00332. SOD_CU_ZN_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G0L8V2-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKNIKFSLAI VVALTILNCK EAKKDTDGSP DSSNKSLETT GGNLAKTKSQ
60 70 80 90 100
TTDTLTVNMS SKSNSTVSGT ITFVQSGTEV EMKAIFTGLD EGPHAIHLHE
110 120 130 140 150
NADCSSQDGK SAGGHWNPTE EAHGKWGSEK GYHKGDIGNF TADKEGRATV
160 170 180 190 200
TFATDEWCID CNDENKNIIG RSVIVHKGQD DFTSQPSGDA GSRIACAGIT

K
Length:201
Mass (Da):21,340
Last modified:October 19, 2011 - v1
Checksum:i1B2B40DE843673EC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FP476056 Genomic DNA. Translation: CAZ94187.1.
RefSeqiWP_013991500.1. NC_015844.1.
YP_004734579.1. NC_015844.1.

Genome annotation databases

GeneIDi10974177.
KEGGizga:zobellia_114.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FP476056 Genomic DNA. Translation: CAZ94187.1.
RefSeqiWP_013991500.1. NC_015844.1.
YP_004734579.1. NC_015844.1.

3D structure databases

ProteinModelPortaliG0L8V2.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi10974177.
KEGGizga:zobellia_114.

Phylogenomic databases

KOiK04565.
OMAiDGKTHGA.

Enzyme and pathway databases

BioCyciZGAL63186:GJN9-115-MONOMER.

Family and domain databases

Gene3Di2.60.40.200. 1 hit.
InterProiIPR018152. SOD_Cu/Zn_BS.
IPR001424. SOD_Cu_Zn_dom.
[Graphical view]
PfamiPF00080. Sod_Cu. 1 hit.
[Graphical view]
SUPFAMiSSF49329. SSF49329. 1 hit.
PROSITEiPS00332. SOD_CU_ZN_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of Zobellia galactanivorans Dsij."
    Genoscope - CEA
    Submitted (JUL-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 12802 / CIP 106680 / NCIMB 13871 / DsijImported.

Entry informationi

Entry nameiG0L8V2_ZOBGA
AccessioniPrimary (citable) accession number: G0L8V2
Entry historyi
Integrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: January 7, 2015
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.