Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

DNA ligase D

Gene

BurJV3_0025

Organism
Stenotrophomonas maltophilia JV3
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSMAL868597:GHCG-25-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
ORF Names:BurJV3_0025Imported
OrganismiStenotrophomonas maltophilia JV3Imported
Taxonomic identifieri868597 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeStenotrophomonasStenotrophomonas maltophilia group
ProteomesiUP000000700: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G0K266-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSLHQYRRKR RLGGGAGQTP EPDETPARTD PKRRPIFVIQ LHHASSRHYD
60 70 80 90 100
FRLEMDGVLK SWAVPKGPSL RVGEKRLAVE VEDHPLSYAG FEGDIPEGHY
110 120 130 140 150
GAGHVDVFDH GTWACEGDPL QALAAGKIDF VLHGQRLAGG WKLVRTAMKG
160 170 180 190 200
RQVQWLLIKR SDEEARDAEA DDLLGAPAVM KRTAGKTGRA VPAARTSTRK
210 220 230 240 250
ADARWHARAL KLDGARDAPY PHGFKPQLTD HRDSAPDGAH WLHEIKWDGY
260 270 280 290 300
RLLADLHDGE VKLRSRNGLD WTDDFPEVVQ AVRALPVRDA RLDGELVVLD
310 320 330 340 350
PEGRSDFAAL QRVIDGSSKQ PLRYIVFDLP GVANADVSRA PLLERKALLK
360 370 380 390 400
DLIGPTPGIL AFSEHVIDHG PQVFDASGEA GFEGIVSKQV DAPYVNARAR
410 420 430 440 450
SWVKVKHEDT DEFVIVGYTA PRGSRVGFGS LLLATPDKEG LRYVGRVGTG
460 470 480 490 500
FDDENLRALF KALQPLAVKT PVLQLPAHVP FRAASVRWLK PVRVAEVAFR
510 520 530 540 550
GWGKEGLLRQ ASFKRLRSDK QKEDLGMSTA TADAEVGGEV QITHPERVVF
560 570 580 590 600
PRQRLSKGDV ADYYRRMARW ILPEIAGRPL SLLRCPDGVG KACFFQKHHG
610 620 630 640 650
PGLGDAVHAV PLQQKSGRED YVYIDDARGL LQLVQMNTLE LHPWGATVAD
660 670 680 690 700
PEHPDRLVFD LDPGDGVSWA QVKAGARDVR DRLQQVGLES FVRLSGGKGV
710 720 730 740 750
HVVVPLQPKA GWDEAKAFCE AFAQAMAQEQ PDRYVATMSK AKRRGVIFID
760 770 780 790 800
WLRNTRGATS VCSWSLRARD SAGVAVPLRW EELARVSAAD AFPMGKALAR
810 820
AKRLKGDPWQ GIARLKQTLP SLKQ
Length:824
Mass (Da):91,090
Last modified:October 19, 2011 - v1
Checksum:i3A108AC4632F8CD1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002986 Genomic DNA. Translation: AEM49361.1.
RefSeqiYP_004790587.1. NC_015947.1.

Genome annotation databases

EnsemblBacteriaiAEM49361; AEM49361; BurJV3_0025.
GeneIDi11044727.
KEGGibuj:BurJV3_0025.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002986 Genomic DNA. Translation: AEM49361.1.
RefSeqiYP_004790587.1. NC_015947.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEM49361; AEM49361; BurJV3_0025.
GeneIDi11044727.
KEGGibuj:BurJV3_0025.

Phylogenomic databases

KOiK01971.

Enzyme and pathway databases

BioCyciSMAL868597:GHCG-25-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: JV3Imported.

Entry informationi

Entry nameiG0K266_STEMA
AccessioniPrimary (citable) accession number: G0K266
Entry historyi
Integrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: March 4, 2015
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.