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G0K266 (G0K266_STEMA) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 11. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
DNA ligase D EMBL AEM49361.1
Gene names
ORF Names:BurJV3_0025 EMBL AEM49361.1
OrganismStenotrophomonas maltophilia JV3 EMBL AEM49361.1
Taxonomic identifier868597 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Xanthomonadales › Xanthomonadaceae › Stenotrophomonas › Stenotrophomonas maltophilia group ›

Protein attributes

Sequence length824 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
G0K266 [UniParc].

Last modified October 19, 2011. Version 1.
Checksum: 3A108AC4632F8CD1

FASTA82491,090
        10         20         30         40         50         60 
MSLHQYRRKR RLGGGAGQTP EPDETPARTD PKRRPIFVIQ LHHASSRHYD FRLEMDGVLK 

        70         80         90        100        110        120 
SWAVPKGPSL RVGEKRLAVE VEDHPLSYAG FEGDIPEGHY GAGHVDVFDH GTWACEGDPL 

       130        140        150        160        170        180 
QALAAGKIDF VLHGQRLAGG WKLVRTAMKG RQVQWLLIKR SDEEARDAEA DDLLGAPAVM 

       190        200        210        220        230        240 
KRTAGKTGRA VPAARTSTRK ADARWHARAL KLDGARDAPY PHGFKPQLTD HRDSAPDGAH 

       250        260        270        280        290        300 
WLHEIKWDGY RLLADLHDGE VKLRSRNGLD WTDDFPEVVQ AVRALPVRDA RLDGELVVLD 

       310        320        330        340        350        360 
PEGRSDFAAL QRVIDGSSKQ PLRYIVFDLP GVANADVSRA PLLERKALLK DLIGPTPGIL 

       370        380        390        400        410        420 
AFSEHVIDHG PQVFDASGEA GFEGIVSKQV DAPYVNARAR SWVKVKHEDT DEFVIVGYTA 

       430        440        450        460        470        480 
PRGSRVGFGS LLLATPDKEG LRYVGRVGTG FDDENLRALF KALQPLAVKT PVLQLPAHVP 

       490        500        510        520        530        540 
FRAASVRWLK PVRVAEVAFR GWGKEGLLRQ ASFKRLRSDK QKEDLGMSTA TADAEVGGEV 

       550        560        570        580        590        600 
QITHPERVVF PRQRLSKGDV ADYYRRMARW ILPEIAGRPL SLLRCPDGVG KACFFQKHHG 

       610        620        630        640        650        660 
PGLGDAVHAV PLQQKSGRED YVYIDDARGL LQLVQMNTLE LHPWGATVAD PEHPDRLVFD 

       670        680        690        700        710        720 
LDPGDGVSWA QVKAGARDVR DRLQQVGLES FVRLSGGKGV HVVVPLQPKA GWDEAKAFCE 

       730        740        750        760        770        780 
AFAQAMAQEQ PDRYVATMSK AKRRGVIFID WLRNTRGATS VCSWSLRARD SAGVAVPLRW 

       790        800        810        820 
EELARVSAAD AFPMGKALAR AKRLKGDPWQ GIARLKQTLP SLKQ

« Hide

References

[1]"Complete sequence of Stenotrophomonas maltophilia JV3."
US DOE Joint Genome Institute
Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Ovchinnikova G., Teshima H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Medau R. expand/collapse author list , Furlan B., Mui Tsai S., Rodriques J., Tiedje J., Woyke T.
Submitted (AUG-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: JV3 EMBL AEM49361.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP002986 Genomic DNA. Translation: AEM49361.1.
RefSeqYP_004790587.1. NC_015947.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEM49361; AEM49361; BurJV3_0025.
GeneID11044727.
KEGGbuj:BurJV3_0025.

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycSMAL868597:GHCG-25-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameG0K266_STEMA
AccessionPrimary (citable) accession number: G0K266
Entry history
Integrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: April 3, 2013
This is version 11 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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